Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g11f
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   0.57 
SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_32997| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      29   4.0  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_37232| Best HMM Match : EGF (HMM E-Value=1)                         28   5.3  
SB_18517| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1246

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
 Frame = +1

Query: 172  PGTTVLQAAAQ-VGVEIPRFCYHE---RLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGM 339
            PGT + QA  +   VE     Y     +L   G     + +V +SP+P  A   P    M
Sbjct: 1082 PGTCLGQAGPRSYNVETEGTTYRRNRRQLISTGETNSQVPDVLESPEPDDAQQQPSQVAM 1141

Query: 340  RVKTNSDLTRKAREGVMEFLLVNHPLD 420
               ++  +TR  REG++ + +V   LD
Sbjct: 1142 PPDSSQAITRPRREGLLGWYMVKSGLD 1168


>SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 205 VGVEIPRFCYHERLAVAGNCRMCLVEVEKS 294
           V V    FCY +RL +A  CR  LV + KS
Sbjct: 203 VSVPYSPFCYQQRLEIAEKCRAVLVFLSKS 232


>SB_32997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 295 PKPVAACAMPVMKGMRVKTNSDLTRKAREGVMEF 396
           P+P    A P  +G  V    DLTR+A E V  F
Sbjct: 95  PRPHVHFARPKQRGNHVAKAKDLTREANEAVTTF 128


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
 Frame = +1

Query: 19   KKMLRQPLSRALALTSPVRAAPLTARRFADQVQAQPEKVEVFIDDQPVHVVPGTTVLQAA 198
            KKM  +P +       P RA+P    + AD       +  V+  D+  H+    T   AA
Sbjct: 1252 KKMAVEPAATKAPTPQPNRASPFFLSKIAD-------RKSVYRRDKLQHIAALNTAHCAA 1304

Query: 199  AQV-GVEIPR-FCYHERLAVAGNCRM--CLVEVEKSPK 300
              V G+++ +     E +   GNC M   L E+ KSP+
Sbjct: 1305 QPVYGIDLVKAVTIVETIGTGGNCVMPDSLNELVKSPE 1342


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 300 TSCCMCNACYEGYACE 347
           ++ C C ACY+G AC+
Sbjct: 292 SAICRCEACYQGLACD 307


>SB_37232| Best HMM Match : EGF (HMM E-Value=1)
          Length = 79

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 403 VNHPLDCPICDQGGECDLQDQSMAFGSDKSRFTDIHFS 516
           VN+   CP+C +G  C+++        DKS   D  FS
Sbjct: 16  VNNTCTCPVCLKGVRCEMKACRAVGLQDKSIIPDSSFS 53


>SB_18517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 306 CCMCNACYEGYAC 344
           CC C AC+ G++C
Sbjct: 30  CCSCMACFSGFSC 42


>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1164

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +1

Query: 172 PGTTVLQAAAQ-VGVEIPRFCYHE---RLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGM 339
           PGT + QA  +   VE     Y     +L   G     + +V +SP+P  A   P    +
Sbjct: 683 PGTCLGQAGPRSYNVETEGTTYRRNRRQLISTGETNSQVPDVLESPEPDDAQQQPSQVAL 742

Query: 340 RVKTNSDLTRKAREGVMEFLLVNH 411
              ++  +TR  RE   E+LL+ +
Sbjct: 743 PPDSSQAITRPRREKFYEYLLLEN 766


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 303  SCCMCNACYEGYACEDQ 353
            S C+C+ACY G  C ++
Sbjct: 1636 SDCVCDACYSGSGCNEE 1652


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,015,643
Number of Sequences: 59808
Number of extensions: 388640
Number of successful extensions: 1255
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)