Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g11f
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   4.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 312 MCNACYEGYACEDQF*PH 365
           +C AC +G+ C  Q   H
Sbjct: 205 VCKACGKGFTCSKQLKVH 222


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 403 VNHPLDCPICDQGGEC 450
           +N P +CP C +   C
Sbjct: 2   INEPQECPYCRRNFSC 17


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 351 GLHTHTLHNR 322
           GLHT T HNR
Sbjct: 407 GLHTTTAHNR 416


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 492 TFVRSKGHGLILQITF 445
           TFVR +G   +LQ++F
Sbjct: 223 TFVRREGEFSVLQVSF 238


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 169 VPGTTVLQAAAQVGVEIPRFCYHERLAVAG 258
           +PG  V+    ++G+E   F Y E +  AG
Sbjct: 377 LPGIGVVYNGDEIGMEDRWFTYQETVDPAG 406


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 600 NAPGAMNATCHYGL 559
           N+PG+  A CH  L
Sbjct: 69  NSPGSFTAGCHSNL 82


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 600 NAPGAMNATCHYGL 559
           N+PG+  A CH  L
Sbjct: 69  NSPGSFTAGCHSNL 82


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 354 IGLHTHTLHNRHCTCSNWFRR 292
           IG      HNR+ T  N FR+
Sbjct: 704 IGKALSKCHNRNVTTCNMFRK 724


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,724
Number of Sequences: 438
Number of extensions: 3172
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)