Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g10r
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   0.55 
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.2  
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    25   9.0  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 371 KTVTSIVKFISNLLGIGASFI*MFFLLESVCRSFCVNHTIT 249
           K   S++K  S +L  G S + +F L +++   FC+NH I+
Sbjct: 277 KRTDSLIKTFSEILQTGISVL-IFLLSKNLDYDFCLNHLIS 316


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 519 ISL*YLYKH*FSLIFQRFEQGICVITHFLHC*LNRI 412
           I+L Y+Y    +L+F  FE G      + HC ++++
Sbjct: 569 ITLTYIYAIKLALLFNDFEFGYAAWQEYWHCKIHKL 604


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 213 NSLGKEKVCVISGDRVIHTERSTY 284
           N+L  E +C+ISG +  H   S +
Sbjct: 115 NALDTESLCIISGQKCWHVRASVH 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,931
Number of Sequences: 5004
Number of extensions: 43657
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)