Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g10f
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p...    29   2.9  
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p...    29   2.9  
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p...    29   2.9  
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle...    29   2.9  
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle...    29   2.9  
U40413-6|AAK39173.2|  356|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
            protein 73, isoform b protein.
          Length = 1638

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 192  TFCTVN*IVFAEF-SLKRVYTFVT-KTVTSIVKFISNLLGIGASFI*MFFLLESVCRSFC 365
            T  T+N + +  F ++++++ F   K +  ++K+ +    +GASFI    LL  +   +C
Sbjct: 1243 TIPTLNPLKYEIFGNIEKIFKFHNDKLLHELIKYENQPEAVGASFIVWIDLLNELYTEYC 1302

Query: 366  VN 371
            VN
Sbjct: 1303 VN 1304


>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
            protein 73, isoform f protein.
          Length = 2140

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 192  TFCTVN*IVFAEF-SLKRVYTFVT-KTVTSIVKFISNLLGIGASFI*MFFLLESVCRSFC 365
            T  T+N + +  F ++++++ F   K +  ++K+ +    +GASFI    LL  +   +C
Sbjct: 1243 TIPTLNPLKYEIFGNIEKIFKFHNDKLLHELIKYENQPEAVGASFIVWIDLLNELYTEYC 1302

Query: 366  VN 371
            VN
Sbjct: 1303 VN 1304


>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
            protein 73, isoform a protein.
          Length = 2488

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 192  TFCTVN*IVFAEF-SLKRVYTFVT-KTVTSIVKFISNLLGIGASFI*MFFLLESVCRSFC 365
            T  T+N + +  F ++++++ F   K +  ++K+ +    +GASFI    LL  +   +C
Sbjct: 1243 TIPTLNPLKYEIFGNIEKIFKFHNDKLLHELIKYENQPEAVGASFIVWIDLLNELYTEYC 1302

Query: 366  VN 371
            VN
Sbjct: 1303 VN 1304


>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73B protein.
          Length = 1638

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 192  TFCTVN*IVFAEF-SLKRVYTFVT-KTVTSIVKFISNLLGIGASFI*MFFLLESVCRSFC 365
            T  T+N + +  F ++++++ F   K +  ++K+ +    +GASFI    LL  +   +C
Sbjct: 1243 TIPTLNPLKYEIFGNIEKIFKFHNDKLLHELIKYENQPEAVGASFIVWIDLLNELYTEYC 1302

Query: 366  VN 371
            VN
Sbjct: 1303 VN 1304


>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73A protein.
          Length = 2488

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 192  TFCTVN*IVFAEF-SLKRVYTFVT-KTVTSIVKFISNLLGIGASFI*MFFLLESVCRSFC 365
            T  T+N + +  F ++++++ F   K +  ++K+ +    +GASFI    LL  +   +C
Sbjct: 1243 TIPTLNPLKYEIFGNIEKIFKFHNDKLLHELIKYENQPEAVGASFIVWIDLLNELYTEYC 1302

Query: 366  VN 371
            VN
Sbjct: 1303 VN 1304


>U40413-6|AAK39173.2|  356|Caenorhabditis elegans Hypothetical
           protein C18B2.2 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 369 NHTITGNNTNLFFP*RISVNLFLFEYDVRVFSSDSIYLSY 488
           +HT   +    FF  R+  +  L EY VR+F  D + L+Y
Sbjct: 311 SHTTAYSPAREFFQRRLRESPLLMEYVVRMFYHDFVILNY 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,049,386
Number of Sequences: 27780
Number of extensions: 248291
Number of successful extensions: 384
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)