Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g06r
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...   291   1e-79
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    29   0.96 
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    28   1.3  
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    27   2.2  
SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1...    27   3.9  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   5.1  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   6.8  

>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score =  291 bits (713), Expect = 1e-79
 Identities = 132/227 (58%), Positives = 171/227 (75%)
 Frame = -3

Query: 764  SHPVVDPLADLGDAAHSFGSVSAAPFGSSAILPISWAYIKMMGPKGLRRATQVAILNANY 585
            SHPVV          +   SVS++PFGS+ ILPISWAY++MMG  GLR A++ A+LNANY
Sbjct: 797  SHPVVSC-----GGKNGITSVSSSPFGSAGILPISWAYMRMMGLAGLRDASKAALLNANY 851

Query: 584  MSRRLEDHYKTLYKGERGLVAHEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWPV 405
            M++RL  HYK +Y  +  L AHEFI+D R+ K TA ++  DIAKRL D+ FHAPT+SWP+
Sbjct: 852  MAKRLSSHYKLVYTNKNNLCAHEFILDAREFKATAGVDATDIAKRLQDYSFHAPTLSWPI 911

Query: 404  AGTLMIEPTESEDLQELDRFCDALITIRKEIKDIEDGLIDKRLNPLKLAPHTQEEVISEE 225
            A TLMIEPTESE + E+DRFCDALI+IR+EI++IE+GL  K  N L  APH Q+++ SE+
Sbjct: 912  ANTLMIEPTESESMYEMDRFCDALISIRQEIREIEEGLQPKDNNLLVNAPHPQKDIASEK 971

Query: 224  WNRPYTREQAAFPAPFVKGETKIWPTVGRIDDMYGDKHLVCTCPPVI 84
            W+RPYTRE+A +P P +K E K WP+V R+DD YGDK+L CTC PV+
Sbjct: 972  WDRPYTRERAVYPVPLLK-ERKFWPSVARLDDAYGDKNLFCTCSPVV 1017


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 224 WNRPYTREQAAFPAPFVKGETKIWPTVGRIDDMYGDKHLVCTCPPVI 84
           W  PY   QA+FPAP V G   +      +        L+  C P+I
Sbjct: 347 WYSPYLCYQASFPAPIVIGLWMLQEYAWNVFPSTKLSSLIAVCVPLI 393


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 423 WSMKSKVHKSFSNISRFNIGCFLEISYV-DNEFV 521
           W +KSK+HK  ++ +   +GC L    V  N+F+
Sbjct: 191 WKLKSKIHKLRAHGTSLKVGCALSTDDVLSNDFL 224


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = -3

Query: 302 EDGLIDKRLNPLKLAPHTQEEVISEEWNRPYTR---EQAAFPAPFVKGETKIWPTVGRID 132
           E G ++   + L L   ++EE  S  W    +    E+A  P  F +G+T I P+    D
Sbjct: 95  ELGAVESSTSSLSLL-QSKEEDDSSNWETEDSESAVEEAELPTIF-EGKTVISPSSSGTD 152

Query: 131 DMYGDKHLVCTCPPVID 81
                ++ V T PP+ D
Sbjct: 153 HSEAVEYTVPTAPPIPD 169


>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 455 KRLMDFGFHAPTMSWPVAGTLMIEPTESEDLQEL 354
           +R   F  H P  SW ++ TL +E   S  L ++
Sbjct: 64  QRTFTFTIHTPPTSWLISKTLDLEKGSSSPLHDI 97


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 521 HEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWP 408
           H F I  RD+K    I  G+   RL+DFG  + T + P
Sbjct: 628 HSFDIIHRDIKDENVILEGNGCARLIDFGSSSLTKNGP 665


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 160 LVSPLTNGAGKAACSLVYGRFHSSEITSSCVCGANFNG 273
           +VSP+ N  GK+  S +Y  F++  +    + G N  G
Sbjct: 806 IVSPIFNSPGKSKDSPMYVNFNNGSMEGVKLSGGNDGG 843


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,571
Number of Sequences: 5004
Number of extensions: 66606
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)