Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11g06r
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169... 288 4e-78
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554... 288 4e-78
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 36 0.047
12_02_1267 - 27448871-27450445 35 0.082
12_02_1268 + 27458823-27460046 33 0.19
12_02_0122 + 13923510-13925081 33 0.19
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927... 33 0.33
10_03_0034 + 7257033-7257045,7257074-7257104,7257880-7258009,725... 31 0.76
07_01_0670 + 5030971-5032698 31 1.0
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 30 1.8
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049... 30 1.8
10_08_0462 - 18116135-18116785 30 2.3
07_01_0672 - 5041742-5043175 30 2.3
07_01_0665 + 5001599-5003149 29 4.1
03_02_0448 + 8593574-8594203,8595027-8595246,8595950-8595999 29 5.4
03_01_0205 + 1621760-1621784,1622079-1622208,1622569-1622635,162... 28 9.4
>06_03_0741 - 24016204-24016298,24016408-24016525,24016805-24016903,
24016992-24017117,24017200-24017277,24017366-24017554,
24018186-24018338,24018785-24018898,24019576-24019761,
24019845-24019970,24020053-24020248,24020338-24020438,
24020533-24020610,24020707-24020952,24021063-24022253
Length = 1031
Score = 288 bits (706), Expect = 4e-78
Identities = 134/223 (60%), Positives = 169/223 (75%), Gaps = 1/223 (0%)
Frame = -3
Query: 764 SHPVVDPLA-DLGDAAHSFGSVSAAPFGSSAILPISWAYIKMMGPKGLRRATQVAILNAN 588
SHPV+ L + G++SAAP+GS+ ILPIS+ YI MMG KGL A+++AILNAN
Sbjct: 794 SHPVITTGGFPLPEKTDPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNAN 853
Query: 587 YMSRRLEDHYKTLYKGERGLVAHEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWP 408
YM++RLE HY L++G G VAHEFIID+R K TA IEP D+AKRLMD+GFHAPTMSWP
Sbjct: 854 YMTKRLEKHYPVLFRGVNGTVAHEFIIDLRGFKTTAGIEPEDVAKRLMDYGFHAPTMSWP 913
Query: 407 VAGTLMIEPTESEDLQELDRFCDALITIRKEIKDIEDGLIDKRLNPLKLAPHTQEEVISE 228
V GTLMIEPTESE ELDRFCDALI+IR+EI +IE G D N LK APH + ++S+
Sbjct: 914 VPGTLMIEPTESESKAELDRFCDALISIREEIAEIESGKADVNNNVLKSAPHPPQLLMSD 973
Query: 227 EWNRPYTREQAAFPAPFVKGETKIWPTVGRIDDMYGDKHLVCT 99
W +PY+RE AAFPA +++G K WPT R+D++YGD++L+CT
Sbjct: 974 SWTKPYSREYAAFPAAWLRG-AKFWPTTCRVDNVYGDRNLICT 1015
>01_06_0461 + 29553709-29554905,29555051-29555296,29555387-29555464,
29555557-29555657,29555745-29555940,29556022-29556147,
29556231-29556416,29556921-29557034,29557522-29557674,
29558287-29558475,29558568-29558645,29558728-29558853,
29558942-29559040,29559315-29559432,29559531-29559625
Length = 1033
Score = 288 bits (706), Expect = 4e-78
Identities = 134/223 (60%), Positives = 169/223 (75%), Gaps = 1/223 (0%)
Frame = -3
Query: 764 SHPVVDPLA-DLGDAAHSFGSVSAAPFGSSAILPISWAYIKMMGPKGLRRATQVAILNAN 588
SHPV+ L + G++SAAP+GS+ ILPIS+ YI MMG KGL A+++AILNAN
Sbjct: 796 SHPVITTGGFPLPEKTDPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNAN 855
Query: 587 YMSRRLEDHYKTLYKGERGLVAHEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWP 408
YM++RLE HY L++G G VAHEFIID+R K TA IEP D+AKRLMD+GFHAPTMSWP
Sbjct: 856 YMAKRLEKHYPVLFRGVNGTVAHEFIIDLRGFKTTAGIEPEDVAKRLMDYGFHAPTMSWP 915
Query: 407 VAGTLMIEPTESEDLQELDRFCDALITIRKEIKDIEDGLIDKRLNPLKLAPHTQEEVISE 228
V GTLMIEPTESE ELDRFCDALI+IR+EI +IE G D N LK APH + ++S+
Sbjct: 916 VPGTLMIEPTESESKAELDRFCDALISIREEIAEIESGKADVNNNVLKSAPHPPQLLMSD 975
Query: 227 EWNRPYTREQAAFPAPFVKGETKIWPTVGRIDDMYGDKHLVCT 99
W +PY+RE AAFPA +++G K WPT R+D++YGD++L+CT
Sbjct: 976 SWTKPYSREYAAFPAAWLRG-AKFWPTTCRVDNVYGDRNLICT 1017
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 35.5 bits (78), Expect = 0.047
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 74 KSHRSQGGTCKQDVCHHTYHQYDQPSARFW 163
KS + GTC + + H+ YHQ ++P A FW
Sbjct: 324 KSAPYEPGTCAKRLTHYMYHQQNRPQASFW 353
>12_02_1267 - 27448871-27450445
Length = 524
Score = 34.7 bits (76), Expect = 0.082
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = -3
Query: 686 GSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERGLVAHEFII 507
G I+ + + + + P +RR + +Y R E +K L K G+ HE +
Sbjct: 363 GGERIIIFTTNHKEKLDPALIRRGRMDVHIEMSYC--RFEA-FKVLAKNYLGVEQHEMFV 419
Query: 506 DVRDLKKTANIEPGDIAKRLM 444
++R L + ++ P D+A+ LM
Sbjct: 420 EIRRLLEEIDMSPADVAENLM 440
>12_02_1268 + 27458823-27460046
Length = 407
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 566 DHYKTLYKGERGLVAHEFIIDVRDLKKTANIEPGDIAKRLM 444
+ +K L K G+ HE ++R L + A++ P D+A+ LM
Sbjct: 294 ESFKVLAKNYLGVEQHEMFGEIRQLLEEADMSPADVAENLM 334
>12_02_0122 + 13923510-13925081
Length = 523
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = -3
Query: 686 GSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERGLVAHEFII 507
G I+ + + + + P +RR + +Y + +K L G+ HE +
Sbjct: 368 GGERIIIFTTNHKEKLDPALIRRGRMDVHIEMSYCGF---EAFKVLASNYLGVEQHELLG 424
Query: 506 DVRDLKKTANIEPGDIAKRLM 444
D+R L + A++ P D+A+ LM
Sbjct: 425 DIRRLLEEADMSPADVAENLM 445
>06_01_1126 -
9277885-9277935,9278129-9278209,9278297-9278350,
9278433-9278564,9278641-9278715,9279056-9279133,
9279215-9279327,9279421-9279535,9280565-9280754,
9281355-9281464,9281559-9281654,9281756-9281818,
9281911-9281988,9282452-9282564,9282664-9282721,
9282797-9282920,9282999-9283060,9283131-9283195,
9283264-9283324,9284242-9284307,9284472-9284531,
9284830-9284960,9285517-9285592,9285701-9285769,
9286065-9286112,9286552-9286671,9286918-9287034,
9287290-9287405,9288348-9288519,9289057-9289100,
9290359-9290712,9291680-9291806
Length = 1072
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +1
Query: 112 CLSPYISSIRPTVGQILVSPLTNGAGKAACSL 207
CL P +S I PT+G IL P G AA SL
Sbjct: 669 CLEPLVSRILPTIGSILEKPKIQQNGLAAGSL 700
>10_03_0034 +
7257033-7257045,7257074-7257104,7257880-7258009,
7258423-7258751,7259923-7260026,7260138-7260476,
7261074-7261199,7261366-7261489,7261615-7261723,
7262171-7262251
Length = 461
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -3
Query: 683 SSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTL 549
+S IL + W + PKGL+ + I+N++Y+S ++ YK +
Sbjct: 36 TSVILGLLWWHSDPSTPKGLQDQVRSDIMNSSYLSLEDQEEYKMM 80
>07_01_0670 + 5030971-5032698
Length = 575
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = -3
Query: 686 GSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERGLVAHEFII 507
G I+ + ++ + P +RR + +Y + +KTL K + AH
Sbjct: 382 GGERIVVFTTNHLDKLDPALIRRGRMDMHIEMSYCGF---EAFKTLAKNYLDVDAHHLFD 438
Query: 506 DVRDLKKTANIEPGDIAKRLM 444
V +L + N+ P D+A+ LM
Sbjct: 439 AVEELLRDVNLTPADVAECLM 459
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 443 DFGFHAPTMSWPVAGTLMIEPTESEDLQELDRFCDALI 330
DF F S ++G ++++P+ D + DRFC L+
Sbjct: 285 DFNFSYSVYSGDLSGGVLVQPSTLRDYDDRDRFCIFLL 322
>03_04_0020 -
16504322-16504654,16504758-16504785,16504937-16504989,
16505377-16505463,16505636-16505704,16506071-16506145,
16507040-16507210,16507693-16507793,16508062-16508139,
16508492-16508648,16508737-16509006,16509369-16509485,
16510250-16510339,16510417-16510629,16510742-16510891,
16511929-16512342
Length = 801
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 443 DFGFHAPTMSWPVAGTLMIEPTESEDLQELDRFCDALI 330
DF F S ++G ++++P+ S+D + D FC L+
Sbjct: 283 DFTFAYSVYSGDLSGGMLVQPSTSDDYDDRDMFCIFLL 320
>10_08_0462 - 18116135-18116785
Length = 216
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 85 ITGG-HVQTRCLSPYISSIRPTVGQILVSPLTNGAGKAACSLVYGRFH 225
+TG + Q RC SP +SS RPT + ++ G S GRFH
Sbjct: 79 VTGRRYPQFRC-SPPVSSARPTPATLTLNSFARGGDGGGRSSCDGRFH 125
>07_01_0672 - 5041742-5043175
Length = 477
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -3
Query: 686 GSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERGLVAHEFII 507
G I+ + ++ + P +RR + +Y + +K L K + AH
Sbjct: 357 GGERIVVFTTNHVGKLDPALIRRGRMDKHIEMSYCCF---ETFKILAKNYLAIDAHHLFD 413
Query: 506 DVRDLKKTANIE--PGDIAKRLM 444
DVR L + A I+ P D+A+ LM
Sbjct: 414 DVRSLLQDARIKITPADVAEHLM 436
>07_01_0665 + 5001599-5003149
Length = 516
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = -3
Query: 686 GSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERGLVAHEFII 507
G I+ + +++ + P +RR + +Y + +K L K G+ AH
Sbjct: 389 GGERIIVFTTNHVEKLDPALIRRGRMDKHIEMSYCGF---EAFKFLAKVYLGIDAHHLFD 445
Query: 506 DVRDLKKTANIEPGDIAKRL 447
VR L + ++ P D+A+ L
Sbjct: 446 AVRALLRDVDMTPADVAENL 465
>03_02_0448 + 8593574-8594203,8595027-8595246,8595950-8595999
Length = 299
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -3
Query: 581 SRRLEDHYKTLYKGERGLVAHEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWPVA 402
+R + D + L + LV I D DL+ T GD+ +++ GF +P + W
Sbjct: 160 TRVIVDRFNVLQADAQDLVRDAAISDRVDLRIT-----GDVGAKILVLGFSSPKVQWWGR 214
Query: 401 GTL 393
G L
Sbjct: 215 GVL 217
>03_01_0205 +
1621760-1621784,1622079-1622208,1622569-1622635,
1622806-1622909,1623099-1623147,1623190-1623290,
1623623-1623740,1624342-1624455
Length = 235
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 352 SNSCRSSDSVGSIISVPATGQDIVGA 429
SN C S+DSV +IS PA G ++GA
Sbjct: 158 SNYCGSTDSVDYMISAPAHGA-VIGA 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,551,888
Number of Sequences: 37544
Number of extensions: 436355
Number of successful extensions: 1174
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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