Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g06r
         (766 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p pro...   380   e-105
AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA...   380   e-105
D90403-1|BAA14399.1| 2833|Drosophila melanogaster inositol 1,4,5...    35   0.14 
AJ238949-1|CAB51853.1| 2828|Drosophila melanogaster inositol 1,4...    35   0.14 
AE014297-265|AAF52015.2| 2828|Drosophila melanogaster CG1063-PA,...    35   0.14 
AE014297-264|AAN13240.1| 2837|Drosophila melanogaster CG1063-PB,...    35   0.14 
X17558-1|CAA35591.1| 1299|Drosophila melanogaster patched protei...    29   5.3  
M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein.     29   5.3  
AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA ...    29   5.3  

>BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p protein.
          Length = 985

 Score =  380 bits (934), Expect = e-105
 Identities = 174/229 (75%), Positives = 201/229 (87%), Gaps = 1/229 (0%)
 Frame = -3

Query: 761  HPVVDPLADLGDAAHSFGSVSAAPFGSSAILPISWAYIKMMGPKGLRRATQVAILNANYM 582
            HPVV PL+      HSFG VSAAPFGSSAILPISW+YIK+MG +GL+RATQVAILNANYM
Sbjct: 759  HPVVSPLSS---EEHSFGVVSAAPFGSSAILPISWSYIKLMGSRGLKRATQVAILNANYM 815

Query: 581  SRRLEDHYKTLYKGERG-LVAHEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWPV 405
            S+RLE HYKTLYK     LVAHEFI+D+RDLKK+ANIE  D+AKRLMD+GFHAPTMSWPV
Sbjct: 816  SKRLEQHYKTLYKAPNSQLVAHEFILDIRDLKKSANIEAVDVAKRLMDYGFHAPTMSWPV 875

Query: 404  AGTLMIEPTESEDLQELDRFCDALITIRKEIKDIEDGLIDKRLNPLKLAPHTQEEVISEE 225
            AGTLMIEPTESED +ELDRFCDA+I+IR+EI +IE G +DK +NPLK++PHTQ +VIS++
Sbjct: 876  AGTLMIEPTESEDKEELDRFCDAMISIREEIAEIEAGRMDKAVNPLKMSPHTQAQVISDK 935

Query: 224  WNRPYTREQAAFPAPFVKGETKIWPTVGRIDDMYGDKHLVCTCPPVIDD 78
            W+RPYTREQAAFPA FVK + KIWPTVGRIDD YGDKHLVCTCPP++ D
Sbjct: 936  WDRPYTREQAAFPAIFVKPDAKIWPTVGRIDDAYGDKHLVCTCPPILPD 984


>AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA
            protein.
          Length = 985

 Score =  380 bits (934), Expect = e-105
 Identities = 174/229 (75%), Positives = 201/229 (87%), Gaps = 1/229 (0%)
 Frame = -3

Query: 761  HPVVDPLADLGDAAHSFGSVSAAPFGSSAILPISWAYIKMMGPKGLRRATQVAILNANYM 582
            HPVV PL+      HSFG VSAAPFGSSAILPISW+YIK+MG +GL+RATQVAILNANYM
Sbjct: 759  HPVVSPLSS---EEHSFGVVSAAPFGSSAILPISWSYIKLMGSRGLKRATQVAILNANYM 815

Query: 581  SRRLEDHYKTLYKGERG-LVAHEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWPV 405
            S+RLE HYKTLYK     LVAHEFI+D+RDLKK+ANIE  D+AKRLMD+GFHAPTMSWPV
Sbjct: 816  SKRLEQHYKTLYKAPNSQLVAHEFILDIRDLKKSANIEAVDVAKRLMDYGFHAPTMSWPV 875

Query: 404  AGTLMIEPTESEDLQELDRFCDALITIRKEIKDIEDGLIDKRLNPLKLAPHTQEEVISEE 225
            AGTLMIEPTESED +ELDRFCDA+I+IR+EI +IE G +DK +NPLK++PHTQ +VIS++
Sbjct: 876  AGTLMIEPTESEDKEELDRFCDAMISIREEIAEIEAGRMDKAVNPLKMSPHTQAQVISDK 935

Query: 224  WNRPYTREQAAFPAPFVKGETKIWPTVGRIDDMYGDKHLVCTCPPVIDD 78
            W+RPYTREQAAFPA FVK + KIWPTVGRIDD YGDKHLVCTCPP++ D
Sbjct: 936  WDRPYTREQAAFPAIFVKPDAKIWPTVGRIDDAYGDKHLVCTCPPILPD 984


>D90403-1|BAA14399.1| 2833|Drosophila melanogaster inositol
           1,4,5-trisphosphate receptorprotein.
          Length = 2833

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 579 RHVICIENGYLRCPPQSFRTHHLNISPRYR*NS*RAKWRGA 701
           R V+C E G L CPP+ FR   + I P  R ++ +  W+ A
Sbjct: 39  RTVVCPEAGDLSCPPKKFRDCLIKICPMNRYSAQKQFWKAA 79


>AJ238949-1|CAB51853.1| 2828|Drosophila melanogaster inositol
           1,4,5-trisphosphate receptorprotein.
          Length = 2828

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 579 RHVICIENGYLRCPPQSFRTHHLNISPRYR*NS*RAKWRGA 701
           R V+C E G L CPP+ FR   + I P  R ++ +  W+ A
Sbjct: 39  RTVVCPEAGDLSCPPKKFRDCLIKICPMNRYSAQKQFWKAA 79


>AE014297-265|AAF52015.2| 2828|Drosophila melanogaster CG1063-PA,
           isoform A protein.
          Length = 2828

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 579 RHVICIENGYLRCPPQSFRTHHLNISPRYR*NS*RAKWRGA 701
           R V+C E G L CPP+ FR   + I P  R ++ +  W+ A
Sbjct: 39  RTVVCPEAGDLSCPPKKFRDCLIKICPMNRYSAQKQFWKAA 79


>AE014297-264|AAN13240.1| 2837|Drosophila melanogaster CG1063-PB,
           isoform B protein.
          Length = 2837

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 579 RHVICIENGYLRCPPQSFRTHHLNISPRYR*NS*RAKWRGA 701
           R V+C E G L CPP+ FR   + I P  R ++ +  W+ A
Sbjct: 39  RTVVCPEAGDLSCPPKKFRDCLIKICPMNRYSAQKQFWKAA 79


>X17558-1|CAA35591.1| 1299|Drosophila melanogaster patched protein
           protein.
          Length = 1299

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -3

Query: 761 HPVVDPLADLGDAAHSFGSVSAAPFGSSAILP-ISWAYIKMMGPKGLRRATQVAILNANY 585
           +P+++  AD+  ++HS  S S A F      P +  +++K +   G       A++++ Y
Sbjct: 641 NPLLEQRADIPGSSHSLASFSLATFAFQHYTPFLMRSWVKFLTVMGF----LAALISSLY 696

Query: 584 MSRRLED 564
            S RL+D
Sbjct: 697 ASTRLQD 703


>M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein.
          Length = 1286

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -3

Query: 761 HPVVDPLADLGDAAHSFGSVSAAPFGSSAILP-ISWAYIKMMGPKGLRRATQVAILNANY 585
           +P+++  AD+  ++HS  S S A F      P +  +++K +   G       A++++ Y
Sbjct: 641 NPLLEQRADIPGSSHSLASFSLATFAFQHYTPFLMRSWVKFLTVMGF----LAALISSLY 696

Query: 584 MSRRLED 564
            S RL+D
Sbjct: 697 ASTRLQD 703


>AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA
           protein.
          Length = 1286

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -3

Query: 761 HPVVDPLADLGDAAHSFGSVSAAPFGSSAILP-ISWAYIKMMGPKGLRRATQVAILNANY 585
           +P+++  AD+  ++HS  S S A F      P +  +++K +   G       A++++ Y
Sbjct: 641 NPLLEQRADIPGSSHSLASFSLATFAFQHYTPFLMRSWVKFLTVMGF----LAALISSLY 696

Query: 584 MSRRLED 564
            S RL+D
Sbjct: 697 ASTRLQD 703


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,745,334
Number of Sequences: 53049
Number of extensions: 712259
Number of successful extensions: 1947
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1945
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)