Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11g06r
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23510-11|AAO38610.1| 444|Caenorhabditis elegans Hypothetical p... 298 2e-81
U23510-10|AAC46780.1| 979|Caenorhabditis elegans Hypothetical p... 298 2e-81
AC006603-1|AAF39749.1| 772|Caenorhabditis elegans Hypothetical ... 33 0.22
AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical ... 30 1.6
Z47067-1|CAA87328.1| 776|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL132877-9|CAC70109.2| 529|Caenorhabditis elegans Hypothetical ... 29 2.7
Z92796-4|CAB63231.1| 516|Caenorhabditis elegans Hypothetical pr... 28 6.3
>U23510-11|AAO38610.1| 444|Caenorhabditis elegans Hypothetical
protein R12C12.1b protein.
Length = 444
Score = 298 bits (732), Expect = 2e-81
Identities = 135/208 (64%), Positives = 171/208 (82%)
Frame = -3
Query: 710 GSVSAAPFGSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERG 531
GSV++AP+GS++IL I+WAYI+MMGP GLR A+QVAILNANYM++RLE+ Y+ +YK E+G
Sbjct: 236 GSVASAPYGSASILAITWAYIRMMGPVGLREASQVAILNANYMAKRLENDYRIVYKDEQG 295
Query: 530 LVAHEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWPVAGTLMIEPTESEDLQELD 351
LVAHEFI+D + KK IE DIAKRLMD+GFH+PTMSWPV LMIEPTESED E+D
Sbjct: 296 LVAHEFIMDCKPFKKHG-IEVVDIAKRLMDYGFHSPTMSWPVHDCLMIEPTESEDKAEMD 354
Query: 350 RFCDALITIRKEIKDIEDGLIDKRLNPLKLAPHTQEEVISEEWNRPYTREQAAFPAPFVK 171
R +AL++IR+EI+ +E+G +DK LNPLK+APHT E+V S+ WN PY+RE AAFP P+
Sbjct: 355 RLVEALLSIREEIRQVENGSLDKHLNPLKMAPHTLEKVTSDNWNMPYSRELAAFPKPWC- 413
Query: 170 GETKIWPTVGRIDDMYGDKHLVCTCPPV 87
K WPTVGR+DD YGD++LVCTCPP+
Sbjct: 414 -THKAWPTVGRVDDQYGDRNLVCTCPPI 440
>U23510-10|AAC46780.1| 979|Caenorhabditis elegans Hypothetical
protein R12C12.1a protein.
Length = 979
Score = 298 bits (732), Expect = 2e-81
Identities = 135/208 (64%), Positives = 171/208 (82%)
Frame = -3
Query: 710 GSVSAAPFGSSAILPISWAYIKMMGPKGLRRATQVAILNANYMSRRLEDHYKTLYKGERG 531
GSV++AP+GS++IL I+WAYI+MMGP GLR A+QVAILNANYM++RLE+ Y+ +YK E+G
Sbjct: 771 GSVASAPYGSASILAITWAYIRMMGPVGLREASQVAILNANYMAKRLENDYRIVYKDEQG 830
Query: 530 LVAHEFIIDVRDLKKTANIEPGDIAKRLMDFGFHAPTMSWPVAGTLMIEPTESEDLQELD 351
LVAHEFI+D + KK IE DIAKRLMD+GFH+PTMSWPV LMIEPTESED E+D
Sbjct: 831 LVAHEFIMDCKPFKKHG-IEVVDIAKRLMDYGFHSPTMSWPVHDCLMIEPTESEDKAEMD 889
Query: 350 RFCDALITIRKEIKDIEDGLIDKRLNPLKLAPHTQEEVISEEWNRPYTREQAAFPAPFVK 171
R +AL++IR+EI+ +E+G +DK LNPLK+APHT E+V S+ WN PY+RE AAFP P+
Sbjct: 890 RLVEALLSIREEIRQVENGSLDKHLNPLKMAPHTLEKVTSDNWNMPYSRELAAFPKPWC- 948
Query: 170 GETKIWPTVGRIDDMYGDKHLVCTCPPV 87
K WPTVGR+DD YGD++LVCTCPP+
Sbjct: 949 -THKAWPTVGRVDDQYGDRNLVCTCPPI 975
>AC006603-1|AAF39749.1| 772|Caenorhabditis elegans Hypothetical
protein B0524.4 protein.
Length = 772
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = -3
Query: 503 VRDLKKTANIEPGDIAKRLMDFGFHAPTMSWPVA---GTLMIEPTESEDLQELDRFCDAL 333
+RD + + E D+ KRL D ++ +A GT +E L E+ + +
Sbjct: 499 IRDFRVYSKSELSDVIKRLPDVQKKLKSLKVVIAGMKGTQSVESDAFSTLSEIGKLSSVI 558
Query: 332 ITIRKEIKDIEDGLID-KRLNPLKL 261
T + + +++ +++ KRLNP L
Sbjct: 559 GTASRSVSNMQMAIVEHKRLNPHSL 583
>AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical
protein R05G9R.1 protein.
Length = 789
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Frame = -3
Query: 749 DPLADLGDAAHSFGSVSAAPFGSSAILPIS---WAY-------IKMMGPKGLRRATQVAI 600
+ L L AA++FGSV P S + P+ W +K+MG K + + I
Sbjct: 566 EDLIPLPTAAYTFGSVDVTPSPSISTTPLEDQLWPLPIRKRHRLKLMGAKMREKTKPIVI 625
Query: 599 LNANYM-SRRLEDHYKTLYKG 540
L N ++++E + +TL G
Sbjct: 626 LPMNKKNAKKMEQYKRTLQTG 646
>Z47067-1|CAA87328.1| 776|Caenorhabditis elegans Hypothetical
protein C43C3.1 protein.
Length = 776
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 359 ELDRFCDALITIRKEIKDIEDGLIDKRLNPLKLAPHTQ 246
EL++ CD I ++KEI + L+D+ +P AP TQ
Sbjct: 342 ELEKLCDLNIDLQKEIAKYRE-LLDRSGDPRANAPSTQ 378
>AL132877-9|CAC70109.2| 529|Caenorhabditis elegans Hypothetical
protein Y105E8B.3 protein.
Length = 529
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 584 MSRRLE-DHYKTLYKGERGLVAHEFIIDVRDLKKTANIEPGDIAKRLMDFGFHA 426
M R LE DH++ L E G+ HE ++ + + A I G +A+ L D H+
Sbjct: 8 MMRYLEGDHFRVLIAVEMGMKNHE-VVPLALVSAIAGIHRGGVARTLNDLCKHS 60
>Z92796-4|CAB63231.1| 516|Caenorhabditis elegans Hypothetical
protein H25K10.5 protein.
Length = 516
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 129 IINTTNRRPDFGLSFNEWR 185
+IN N PDF ++F EWR
Sbjct: 307 LINLENLHPDFCITFREWR 325
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,334,440
Number of Sequences: 27780
Number of extensions: 367170
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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