Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g06r
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         26   0.44 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   1.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.5  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 44  IYHSQHSLKVKSHRSQGGTCKQDVC 118
           I HS  +++  + R +GG+C+  VC
Sbjct: 76  INHSACAIRCLAQRRKGGSCRNGVC 100


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 353 DRFCDALITIRKEIKDIEDGLIDKRL 276
           D FC  +    KEI  I D L++ +L
Sbjct: 7   DTFCKKMRKATKEIHSISDSLVNAKL 32


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 719 EPRLLNRPTDRQQD 760
           EP L  RP+DRQ++
Sbjct: 275 EPILTERPSDRQRN 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,578
Number of Sequences: 438
Number of extensions: 4662
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)