Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g06f
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...   102   3e-23
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    29   0.62 
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    27   2.5  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   5.8  

>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score =  102 bits (245), Expect = 3e-23
 Identities = 55/133 (41%), Positives = 76/133 (57%), Gaps = 12/133 (9%)
 Frame = +3

Query: 201 FPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQ-------GLMNISE 359
           FP    F  RHIGP   D    L+ LGYK  D    D +P  ++         G +N +E
Sbjct: 43  FPALDTFEPRHIGPSKTDQQYQLESLGYKDFDSFLKDVIPDSVRTPESQLMAFGSVNPNE 102

Query: 360 ---PI--SEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPY 524
              P+  SE +       +A +N++ +S+IGMGY+N  +P AI RN+ ENP W TQYTPY
Sbjct: 103 KNPPVNYSESEFTTLANNVANQNKLIKSFIGMGYYNVKLPAAIQRNVLENPEWYTQYTPY 162

Query: 525 QPEVAQGRLESLL 563
           Q E++QGRLES++
Sbjct: 163 QAEISQGRLESMM 175


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 72  QRFLKGKLMSRSTIDGFHKTYFE-NKMLSAIRHVTTQSTRSDTLFPDR 212
           Q+ LKGK     TI G  +   E NK+L +  H+ ++ T +DT   +R
Sbjct: 99  QKTLKGKESPFETIFGKERKEMESNKLLDSATHLQSRVTEADTKNDER 146


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 150 AFYFRNKFYENHRSYSYS 97
           AFY    FY+NHR Y+ S
Sbjct: 127 AFYRLKNFYQNHRRYTVS 144


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 11  SDAFVSATCCVQFMSFVINNAEIFKRKVNE 100
           S+  VS   C+QF+S +    EIF +   E
Sbjct: 382 SELCVSIEQCIQFLSLIREQKEIFNKNNKE 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,708
Number of Sequences: 5004
Number of extensions: 53497
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)