Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g06f
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554...   100   7e-22
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169...    99   1e-21
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623...    29   3.4  
09_02_0455 + 9517802-9518121,9518177-9518423,9518517-9518804           28   4.5  
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535...    28   4.5  
09_03_0113 + 12458824-12458976                                         28   5.9  

>01_06_0461 +
           29553709-29554905,29555051-29555296,29555387-29555464,
           29555557-29555657,29555745-29555940,29556022-29556147,
           29556231-29556416,29556921-29557034,29557522-29557674,
           29558287-29558475,29558568-29558645,29558728-29558853,
           29558942-29559040,29559315-29559432,29559531-29559625
          Length = 1033

 Score =  100 bits (240), Expect = 7e-22
 Identities = 54/139 (38%), Positives = 78/139 (56%), Gaps = 5/139 (3%)
 Frame = +3

Query: 162 RHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQ--- 332
           ++ T +   +  L P    FP RH      +   M    G+ +LD L +  VP  I+   
Sbjct: 54  QYTTGRPVSASALQPSDT-FPRRHNSATPAEQAAMASECGFNTLDALIDATVPAAIRAPT 112

Query: 333 --FQGLMNISEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWT 506
             F G  +     +E  +I+ ++ +A  N+ ++S+IGMGY+N  VP  I+RN+ ENP W 
Sbjct: 113 MHFSGKFDAG--FTESQMIDHMQRLAAMNKAYKSFIGMGYYNTHVPAVILRNLMENPAWY 170

Query: 507 TQYTPYQPEVAQGRLESLL 563
           TQYTPYQ E+AQGRLESLL
Sbjct: 171 TQYTPYQAEIAQGRLESLL 189


>06_03_0741 -
           24016204-24016298,24016408-24016525,24016805-24016903,
           24016992-24017117,24017200-24017277,24017366-24017554,
           24018186-24018338,24018785-24018898,24019576-24019761,
           24019845-24019970,24020053-24020248,24020338-24020438,
           24020533-24020610,24020707-24020952,24021063-24022253
          Length = 1031

 Score =   99 bits (238), Expect = 1e-21
 Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
 Frame = +3

Query: 219 FPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQGLM---NISEPISEYDLIER 389
           FP RH      +   M    G+ ++D L +  VP  I+   +          +E ++IE 
Sbjct: 70  FPRRHNSATPAEQAAMASECGFGTVDALIDATVPAAIRAPEMRFSGRFDAGFTESEMIEH 129

Query: 390 VRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPYQPEVAQGRLESLL 563
           ++ +A  N  ++S+IGMGY+N  VP  I+RN+ ENP W TQYTPYQ E+AQGRLESLL
Sbjct: 130 MQRLAAMNRAYKSFIGMGYYNTHVPAVILRNLMENPAWYTQYTPYQAEIAQGRLESLL 187


>04_04_1593 -
           34661670-34661798,34661882-34661989,34662129-34662368,
           34662614-34662782,34662872-34663362,34663681-34663991,
           34664396-34664473,34665034-34665228,34665363-34665524,
           34665759-34665840
          Length = 654

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 99  SRSTIDGFHKTYFENKMLSAIRHVTTQSTRSDTLFPDRV 215
           +R+T+D  HKTY   K     RH+     + DT  PD V
Sbjct: 125 TRATLDALHKTYMTRKE----RHINIVPFKFDTPSPDDV 159


>09_02_0455 + 9517802-9518121,9518177-9518423,9518517-9518804
          Length = 284

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
 Frame = +3

Query: 36  VVYNLCHLLLIMQRFLKGKLMSRSTIDGFHKTYFENKMLSAIRHVTTQSTR----SDTLF 203
           VV +   L  I +   + K M     D   + +FE  +L ++ H    S R    +D + 
Sbjct: 47  VVSSSMALKAISRETEQHKKMGSGGEDRHRRIWFEWDVLMSLSHPLLPSLRGVLATDVVV 106

Query: 204 PDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQ 332
             R    ++ +  +++   T+ ++   KS  +LTNDA+  +++
Sbjct: 107 GPRRWLQAKLVAAKNRHATTVAEIPPLKSTVELTNDAIVARME 149


>01_06_0411 +
           29151647-29151790,29152974-29153039,29153398-29153538,
           29153638-29153724,29153968-29154084,29154177-29154265,
           29154510-29154561,29154667-29154762,29154835-29154879,
           29155002-29155091,29155164-29155235,29155490-29155618
          Length = 375

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 54  HLLLIMQRFLKGKLMSRSTIDGFHKTYFENKMLSAIRHVTTQSTRSD 194
           H+  I+QR  KGKL     ID F++  F+      +  +TT     D
Sbjct: 161 HISRILQRHFKGKLYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKD 207


>09_03_0113 + 12458824-12458976
          Length = 50

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 483 MFENPGWTTQYTPYQPEVAQGR 548
           M    GW TQ  P QPE+ QG+
Sbjct: 13  MMRVAGWLTQQPPDQPELLQGK 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,341
Number of Sequences: 37544
Number of extensions: 305628
Number of successful extensions: 649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)