Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g06f
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...   130   7e-31
AF125461-3|AAK18996.2|  282|Caenorhabditis elegans Hypothetical ...    30   1.0  
Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical p...    29   3.1  
AC006630-4|AAK68324.1|  311|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    28   4.0  
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U97193-9|AAL13319.1|  401|Caenorhabditis elegans Tropomodulin pr...    27   9.3  

>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score =  130 bits (314), Expect = 7e-31
 Identities = 58/115 (50%), Positives = 79/115 (68%)
 Frame = +3

Query: 219 FPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQGLMNISEPISEYDLIERVRL 398
           F  RHIGPR  +   MLD +GYK LD LT   VP  I+ +  + +  P+ EY +++ +  
Sbjct: 30  FVDRHIGPRRLEQQQMLDFIGYKDLDDLTGTNVPNMIKAEKALELPAPLDEYKMLKELEA 89

Query: 399 IAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPYQPEVAQGRLESLL 563
           IA +N+I+RSYIGMGY++  VP  I RN+ +N GW +QYTPYQ E++QGRLESLL
Sbjct: 90  IAAQNKIYRSYIGMGYYDTIVPAVISRNILQNIGWISQYTPYQAEISQGRLESLL 144


>AF125461-3|AAK18996.2|  282|Caenorhabditis elegans Hypothetical
           protein Y8A9A.5 protein.
          Length = 282

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 354 SEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNM 485
           S  +SE DLI+ +  I E +EI   Y    YHN    H   + +
Sbjct: 93  SANLSERDLIDHIMDITENSEIKELYFKSDYHNVIFLHNCFKGL 136


>Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical
           protein C27A7.3b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 108 TIDGFHKTYFENKMLSAIRHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTML 269
           + DGF K Y E +++ ++  +     ++D ++P    FPS+   P    +VT L
Sbjct: 55  SFDGFAKEYLERRIVKSLELIAECGVKADRVYP---SFPSKTF-PNHYTMVTGL 104


>Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical
           protein C27A7.3a protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 108 TIDGFHKTYFENKMLSAIRHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTML 269
           + DGF K Y E +++ ++  +     ++D ++P    FPS+   P    +VT L
Sbjct: 85  SFDGFAKEYLERRIVKSLELIAECGVKADRVYP---SFPSKTF-PNHYTMVTGL 134


>AC006630-4|AAK68324.1|  311|Caenorhabditis elegans Hypothetical
           protein F14H12.2 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 121 KPSIVLLLINFPFKNLCIINNK*HKLYTTCSAHK 20
           +P   LLL N P+KNLC +N   + L+ + S  K
Sbjct: 62  QPGRYLLLQNRPYKNLCWLNTMLNVLFKSTSFSK 95


>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = -2

Query: 240 GQCVYSGSPLYLGIMYQNEYFVL*HDEWHLAFYFRNKFYENHRSYSYSLTFLLKISAL 67
           G C Y+GS L   + +      L H  W L   F  +FY  H      LT LLKIS +
Sbjct: 78  GPCKYTGS-LSCEVGFSFLLHCLTHSVWSLLISFGYRFYILHNPALSRLT-LLKISIM 133


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical
           protein T28F3.5 protein.
          Length = 1679

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 243 RDQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQGLMNISEPISEYDLIERVRLIAE 407
           ++ D++    +LG   +D+   D +P   +F G M     + E    ER +LI E
Sbjct: 704 KEGDLINPGSILGRLEIDKQVQDQLPTSEKFSGKMK-GWKMEEKSYFERAKLILE 757


>U97193-9|AAL13319.1|  401|Caenorhabditis elegans Tropomodulin
           protein 1, isoform b protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 120 FHKTYFENKMLSAIRHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQ 299
           +H  Y E K  SA     + +++  T  P +V     + G +D DI  +L  L    L+ 
Sbjct: 17  YHSYYSEEKTFSA----PSANSQQGTQLPSKV----YNKGLKDNDIEGLLSSLSIDELED 68

Query: 300 LTNDAVP 320
           L ND  P
Sbjct: 69  LNNDFDP 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,314,940
Number of Sequences: 27780
Number of extensions: 289390
Number of successful extensions: 676
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)