Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g02r
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    27   1.9  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    25   7.7  

>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 481 SYPEVCGKLINPNQQKGMRPHLRKVTDPSKRF 386
           +Y  VCGK  +P+Q+K +R   R++  P ++F
Sbjct: 417 AYAAVCGKTRSPHQKKPLRVEFRQLR-PMQQF 447


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
 Frame = -1

Query: 556 IAGVPPIHTDGPGEAGPYVKTEGL-------LSYPEVCGKLINPNQQKGMRPHLRKVTDP 398
           I  +P I  + PG  G     EG+       LS  +   K   P     +   + KV   
Sbjct: 111 IVSIPEIQLEIPGRLGQLTTIEGILSNVVDDLSKEQESRKESAPQLYDQINAFIEKVN-- 168

Query: 397 SKRFGTYAFRLPDDNGEGGIWVSYEDPDTAGQKAAYVKSK 278
           S R G+  F +  D+  G  W+  + P   G + + V  K
Sbjct: 169 SLRSGSVPFTITVDDITGNSWIEMK-PGRDGDRWSQVSYK 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,692
Number of Sequences: 5004
Number of extensions: 64268
Number of successful extensions: 177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)