Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11g02r
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 47 2e-05
11_04_0234 + 15187065-15188241,15188316-15188494 42 5e-04
10_05_0053 + 8602142-8603581 32 0.49
01_06_0386 - 28917678-28918112 30 1.5
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 29 3.4
01_05_0226 + 19506090-19506187,19506668-19506763,19507780-19507900 29 4.5
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 28 6.0
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 28 6.0
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 28 7.9
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 46.8 bits (106), Expect = 2e-05
Identities = 35/144 (24%), Positives = 61/144 (42%)
Frame = -1
Query: 667 NADAAVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIAGVPPIHTDGPGEAGPYVKTEG 488
+A V WL +G P+ K+V+ I +GR+W L + P+ GP + G G
Sbjct: 260 SASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGS--NATG 317
Query: 487 LLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNGEGGIWVSYEDPDTA 308
+SY EV + + +G R + + S +Y G +WV+++
Sbjct: 318 AMSYAEV--QWLAATATRGSRAVITAYDNAS--VASYV-------SVGDVWVAFDGVAVV 366
Query: 307 GQKAAYVKSKNLGGVAIVDLSLDD 236
+K A+ L G + ++ DD
Sbjct: 367 AEKLAFAARCGLLGYFLWPVNYDD 390
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 41.9 bits (94), Expect = 5e-04
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 1/145 (0%)
Frame = -1
Query: 667 NADAAVTYWLTSGAPSQKIVLSIATFGRTWKL-DADSEIAGVPPIHTDGPGEAGPYVKTE 491
+A V WL +G P K+V+ I FGR+W L + D G P T G
Sbjct: 259 SASYGVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAP---TAAAGTKQRKSNQI 315
Query: 490 GLLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNGEGGIWVSYEDPDT 311
G+++Y E+ ++ ++ VT ++ Y + G +WVS++
Sbjct: 316 GVIAYAEI---------EEYLKSQSVFVTHDNQSVADYFY-------SGDLWVSFDSAVV 359
Query: 310 AGQKAAYVKSKNLGGVAIVDLSLDD 236
+K +V L G + +S DD
Sbjct: 360 VQEKVEFVAKSQLLGYFLSTISFDD 384
>10_05_0053 + 8602142-8603581
Length = 479
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 150 YVIKVKIF*RRYLAALRIGYLSPVQRPRKSSNDRSTIATPPRFFDL 287
Y+ + K RRY+ AL +G++ QR +++S+ S PPRF L
Sbjct: 99 YICRRKPPSRRYVGALAVGFVQ--QRRQENSSSSSGAPPPPRFIPL 142
>01_06_0386 - 28917678-28918112
Length = 144
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +3
Query: 339 MPPSPLSSGRRKAYVPKR--LLGSVTFLR*GRIPFCWLGLINLPQTSG*LSKPSVLTYGP 512
+PPS L+S ++ ++P R L+ + + ++ C LGLI P + S LT G
Sbjct: 35 IPPSALASPMQRIWIPTRTPLIDTDWY----KVVVCSLGLITKPSGNSVDSTACTLTSGA 90
Query: 513 ASPGPSVWIGGTPAISLSASSFQV 584
+S V + G S + F +
Sbjct: 91 SSSKSPVVLPGIAHFGASNAGFDI 114
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 243 NDRSTIATPPRFFDLT*AAFWPAVSGSSYDTQMPPSPLSSGRRKA 377
+D + T P L A A GS T PPSP GRR++
Sbjct: 537 SDNGGMMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581
>01_05_0226 + 19506090-19506187,19506668-19506763,19507780-19507900
Length = 104
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 325 RMIPKCHPHRCHQEDGRRMFRNA 393
+M +CH H H DGR + R A
Sbjct: 35 KMKTRCHDHELHDADGRSILRKA 57
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 207 YLSPVQRPRKSSNDRSTIATP-PRFFDLT*AAFWPAVSGSSYDTQMP-PSPLSSGR 368
+L P + P SS ST ATP P P++S + D+ P PSPLSSGR
Sbjct: 55 FLEP-EVPTDSSLYTSTSATPEPPTIRQKSRNLSPSISHQASDSFSPVPSPLSSGR 109
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 322 DPDTAGQKAAYVKSKNLGGVAIVDLSLDDFRGLCTGDK 209
D + G+ A + G V V ++D+FR LCTGDK
Sbjct: 71 DVEVGGEPAGRIVIGLFGEV--VPKTVDNFRALCTGDK 106
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 470 FWVTEQTFSLNVWSSFAGTISVDWRDSRN 556
F+ T+ ++ VW + A +I+V W SRN
Sbjct: 54 FYATDGGLAVGVWLATAPSITVTWTASRN 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,354,714
Number of Sequences: 37544
Number of extensions: 452764
Number of successful extensions: 1282
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -