Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g01r
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   2.3  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.1  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   5.4  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    25   7.1  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   9.4  
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    25   9.4  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 317  NGRVNXDYIYRASNENFVNLI 255
            NG+V   +++ +SN N VNLI
Sbjct: 982  NGKVKLGFMFHSSNPNIVNLI 1002


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 20  FNLWYEFNMGYRHDRRQFFFFIFLRHVNGLIE 115
           + LW   +  + +D   +   I+LRH NG+++
Sbjct: 352 WQLWPTLSKFFTNDNMPYISSIYLRHFNGVLQ 383


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 619 GWYGLHIKSIFFFLFLR*VDELT 551
           GW+GL I  I F LFL   +E T
Sbjct: 216 GWWGLIISGITFVLFLFTFEETT 238


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 174 LPQSALMRAFRNVVYRSRWPSIKPFTCRKKMKKKNCLRSCRYPILNSYHRLKIV 13
           +P +    A    +Y    P+ + F  R +     CL++  YP L+S  R ++V
Sbjct: 133 MPSTREFAAIFKHLYNKLDPNFR-FGARYEEDVTTCLKALNYPFLDSISRSRLV 185


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 11  STIFNLWYEFNMGYRHDRRQFFFFIFLRHVNGLIEG 118
           STI+  WY+  + YR           L H+N  I G
Sbjct: 824 STIWYDWYDHKVIYRQHNENITLSAPLTHINVAIRG 859


>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 276 REFCELDIYKKLIP 235
           RE CE +I KKLIP
Sbjct: 114 REICECEIEKKLIP 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,981
Number of Sequences: 5004
Number of extensions: 53226
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)