Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g01r
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879...    31   1.0  
02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504     28   5.6  
08_01_0684 + 6009474-6009582,6009715-6009904,6011412-6011483,601...    28   7.4  
04_04_1692 + 35395409-35395535,35395632-35395849,35397302-35398489     28   7.4  
04_04_0849 - 28689098-28689188,28689373-28689503,28689850-286899...    28   7.4  

>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
            87962-88042,88133-88237,88338-88568,88665-90197,
            90660-90752,91477-92887,93184-93305,93479-93718,
            94521-94682,94770-94937,95025-95141,95266-95376,
            95919-96506
          Length = 1787

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 18   FLICGMNSIWDTDTTVDNFFF 80
            +LICG   IW+ D+ VDN  F
Sbjct: 1644 YLICGRREIWEPDSLVDNIKF 1664


>02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504
          Length = 331

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/79 (22%), Positives = 33/79 (41%)
 Frame = -1

Query: 563 GRAHSPPDVKWLLEPIDMYNVNAPPTLRYKL*GLNGCPTLQTETHYCFTAEISRVVVPXL 384
           GRA +     W++    M N + PP   + L  +      +TET   ++ E  +  V  +
Sbjct: 137 GRAPNGVKTNWVMHEFRMENPHTPPKEDWVLCRVFYKKKAETETESSYSMENEQEAVIAM 196

Query: 383 ADSQEVIPPVNCHTKKNET 327
           A S   I    C++  + +
Sbjct: 197 ARSAAAIKAGGCYSNSSSS 215


>08_01_0684 +
           6009474-6009582,6009715-6009904,6011412-6011483,
           6011644-6011715,6011806-6011877,6012163-6012234,
           6012283-6012354,6012479-6012550,6012634-6012705,
           6013112-6013183,6013275-6013349,6013453-6013524,
           6013619-6013684,6013752-6013777,6014179-6014558,
           6014642-6014840,6014910-6015068,6015569-6015613,
           6015742-6015973,6016053-6016203,6016306-6016665
          Length = 879

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 346 WQFTGGMTSCESARXGTTTLLISAVKQ 426
           WQF GG TS  ++  G+TT  +S  K+
Sbjct: 833 WQFRGGNTSYVTSHSGSTTPKLSRQKE 859


>04_04_1692 + 35395409-35395535,35395632-35395849,35397302-35398489
          Length = 510

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 481 DISCKVSTAAQPFKPK--RITASRQK*AGWWYLXLRT 377
           D  C ++  A+ F P+  R +ASR     WWY  + T
Sbjct: 150 DKPCGLALGAEQFDPEHPRESASRSSLFNWWYFSMAT 186


>04_04_0849 -
           28689098-28689188,28689373-28689503,28689850-28689956,
           28692318-28692396,28692583-28692678,28692777-28693049,
           28693139-28693285,28693381-28693723,28693784-28693995
          Length = 492

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 386 G*VPPPCLFLP*SSNAFRFEGLGSR*DLTTYISRWVAHLHCTCLWAPVTT*HQVGCELVH 565
           G +PP  + LP     F+F    +  D+  +I   +A L C   + P+     VG  +V 
Sbjct: 34  GQLPPGSMGLPLVGETFQFFSSDASLDIPPFIRHRLASLGCKFRYGPIFKTSLVGHPVVV 93

Query: 566 SSKE 577
           S+ E
Sbjct: 94  SADE 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,586,961
Number of Sequences: 37544
Number of extensions: 350218
Number of successful extensions: 669
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)