Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g01r
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    29   3.8  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    29   3.8  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    29   3.8  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    28   5.0  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    28   5.0  
Z69659-5|CAL63991.1|  100|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 465 TLQLISQGGWRIYIVHVYGLQ*PLNIRW---AVSSSTHLRNKKKKILFMCRPYQPCSGIN 635
           ++QLI     RI+   VYG++ P+N+ W   A+  ST     K  +  +C+ Y+  S I 
Sbjct: 218 SVQLIISSVRRIHDAAVYGIKDPINVSWPTIAIMGSTIA--VKLTLFIICQKYKSNSSIK 275

Query: 636 L 638
           +
Sbjct: 276 V 276


>Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical
           protein T02D1.6 protein.
          Length = 433

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -2

Query: 202 PHXHGXRFRITAISINACLPKRSLSFTLALNQTVYVSQK 86
           PH H  R R   IS  ACL   S++F L L    Y S K
Sbjct: 172 PHHHRLRSRTFVISTIACL--SSIAFVLLLPMLTYASAK 208


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 444  KGWAAVETLQLISQGGWRIYIVHVY 518
            KGW  V  +  +  G W +  +H+Y
Sbjct: 1156 KGWNVVRDVLYLRHGAWAVLFIHIY 1180


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 444  KGWAAVETLQLISQGGWRIYIVHVY 518
            KGW  V  +  +  G W +  +H+Y
Sbjct: 1134 KGWNVVRDVLYLRHGAWAVLFIHIY 1158


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 444  KGWAAVETLQLISQGGWRIYIVHVY 518
            KGW  V  +  +  G W +  +H+Y
Sbjct: 1156 KGWNVVRDVLYLRHGAWAVLFIHIY 1180


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 435 NALLLHGRNKQGGGTXPCG 379
           +A L+ GRNK+ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 435 NALLLHGRNKQGGGTXPCG 379
           +A L+ GRNK+ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>Z69659-5|CAL63991.1|  100|Caenorhabditis elegans Hypothetical
           protein F07C6.6 protein.
          Length = 100

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 210 LVNCXQPTLGLISYKYQVHKILVRS 284
           ++ C    +G ++Y Y +H++LVR+
Sbjct: 42  IIGCVMTAIGGLAYVYTIHEVLVRA 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,125,569
Number of Sequences: 27780
Number of extensions: 305144
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)