Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g01f
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    27   2.6  
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    26   4.6  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    25   8.1  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   8.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   8.1  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.1  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   8.1  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   8.1  

>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 416 HCTYFFVIFFTNLIVAYILSLLGRDQ*ERST 324
           HC Y F    TN++V+ +L LLG  Q   ST
Sbjct: 130 HCVYLFYCISTNVLVSSLL-LLGGSQGFSST 159


>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 407 YFFVIFFTNLIVAYILSL 354
           +FF++F T  IVAYIL +
Sbjct: 52  FFFLLFRTGAIVAYILGM 69


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 68  RKIVTKKILNRMILRNKKRVMAGLLTR*CTKGGPY 172
           R +V +KI   M  R K+ ++AG+ T  C K  PY
Sbjct: 86  RGLVLRKIAKMM--REKRELLAGIDTINCGKPTPY 118


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 423 PADDQLVTQYCEPENPWKHVPA 488
           P+DD +VT+   P NP K + A
Sbjct: 142 PSDDVVVTEKANPANPAKFLKA 163


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 423 EMTLYVFFCYFFH*SHCR 370
           E   Y FF +FF  SHCR
Sbjct: 72  EAFFYWFFFFFFFFSHCR 89


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 461 RKPLETCSGNESRSDSGGLFGVVQAVQHDADRLRA 565
           RKPL++   NE  S   G   V+  + H A  L A
Sbjct: 90  RKPLQSEGINEDDSQKNGELIVLHGINHQAAMLTA 124


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = +3

Query: 402 KIRTVSFPADDQLVTQYCEPENPWKHVPATNRAQIAADYLELCRRYNTTPIDS 560
           KIR V    DD   T  CE    W+H    N           C +    PID+
Sbjct: 3   KIRCVCPFEDDDGFTIQCESCEVWQHAVCVNIDANNVPEKYFCEQCQPRPIDA 55


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 376 MRLVKKITKKYVQCHFPPTIS*SHSTASQKTLGNMFR 486
           + L+K+  K+Y + H P  IS   S   Q+  G  FR
Sbjct: 166 VNLLKRSLKRYNELHIPFDISTPSSEEKQQASGLNFR 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,007
Number of Sequences: 5004
Number of extensions: 49219
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)