Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11g01f
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0571 - 19602755-19603831                                         28   4.7  
04_04_0890 + 29122442-29122805,29122965-29123119,29123238-291233...    27   8.2  
01_03_0242 + 14113721-14113966,14114102-14114260,14114495-141148...    27   8.2  

>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 514 TIWSCAGGTTRRRSTPCCS*SG 579
           T WS +   TRRRS P C  SG
Sbjct: 8   TAWSSSALATRRRSAPSCGSSG 29


>04_04_0890 +
           29122442-29122805,29122965-29123119,29123238-29123304,
           29123401-29123452,29124047-29124099,29126158-29126513,
           29126633-29126713
          Length = 375

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 428 RRSASHTVLRARKPLETCSGNESRSDSGGLFGVVQAVQHDADRLRAAA 571
           RRSA    L A KP    +GNE+ S S     V++A  + ++ L  AA
Sbjct: 30  RRSARRFQLHAEKPASPGAGNETSSSSEN--AVLRAAWYGSELLGIAA 75


>01_03_0242 +
           14113721-14113966,14114102-14114260,14114495-14114868,
           14114939-14115419,14115651-14116192,14116253-14116531,
           14116837-14116918,14116994-14117086,14117173-14117367
          Length = 816

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 378 EISEKNNKKIRTVSFPADDQLVT-QYCEPENPWKHVPATNRAQIAADYLELCRR 536
           ++ E + +  RT+S P + +L   QY  PE+   ++P     Q   D+ E  RR
Sbjct: 42  KVPESSEESWRTLSDPFELELAQLQYERPEDDPDYIPIEQATQRPRDHRERTRR 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,618,672
Number of Sequences: 37544
Number of extensions: 309183
Number of successful extensions: 695
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)