Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f24f
         (331 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   0.83 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   0.83 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   4.4  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    20   7.7  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 0.83
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 11  YSYNSTR-NTLY-FNTIYSNY*NHQKYYS 91
           Y +N  + N  Y +N  YSNY N+Q+ +S
Sbjct: 204 YQFNDPQFNFNYQYNQAYSNYNNYQEGFS 232


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.0 bits (47), Expect = 0.83
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 11  YSYNSTR-NTLY-FNTIYSNY*NHQKYYS 91
           Y +N  + N  Y +N  YSNY N+Q+ +S
Sbjct: 224 YQFNDPQFNFNYQYNQAYSNYNNYQEGFS 252


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory
          receptor candidate 53 protein.
          Length = 659

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +3

Query: 3  HIFIHIIP 26
          HIF+HI+P
Sbjct: 60 HIFMHIVP 67


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 175 LVPVLLNNVINKCPAIMLAV 116
           L+P+ L  + ++CP + L +
Sbjct: 367 LLPLFLTQLKDECPEVRLNI 386


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,288
Number of Sequences: 336
Number of extensions: 509
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6367260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)