Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f24f
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    44   6e-06
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    24   6.8  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    23   9.0  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    23   9.0  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 44.0 bits (99), Expect = 6e-06
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = +3

Query: 6   IFIHIIPQGTPYILIPFXXXXXXXXXXXRPGTLAVRLTANIIAGHLLITLL-----RRTG 170
           +F   +P GTP  LIP            R  +L +RL ANIIAGHL +++L        G
Sbjct: 149 VFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMG 208

Query: 171 TN-ISFYXXXXXXXXXXXXXXXESAVAIIQSYVITIL 278
            N I+F                E  +A IQ+YV  IL
Sbjct: 209 LNLITFIIGFLPITVLVAISLLEFGIAFIQAYVFAIL 245


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 5   HIYSYNSTRNTLYFNTIYSNY 67
           +IYSYN  R+ L  N +   Y
Sbjct: 529 YIYSYNGERDELVLNNLRPRY 549


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 163 LLNNVINKCPAIMLAVNRTAKVPGRIIFLMVSIITING 50
           L+ N   KC  I L  N+     GR+ +   S+I  NG
Sbjct: 215 LIQNATEKCGGIYLYSNQRGCDGGRLYYDGSSMIFANG 252


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 68  NNYYKWY*NIGCSLWNYMNKYV 3
           N++Y W+       WNY N ++
Sbjct: 360 NSFYDWHNGATQVKWNYKNPHI 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 732,486
Number of Sequences: 5004
Number of extensions: 8281
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)