Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f23r
         (743 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2F9H5 Cluster: Putative uncharacterized protein; n=4; ...    33   7.4  
UniRef50_Q54TJ6 Cluster: Putative uncharacterized protein; n=1; ...    33   9.8  

>UniRef50_A2F9H5 Cluster: Putative uncharacterized protein; n=4;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 2069

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +2

Query: 515  LSIGSNKIFVTYDXXXXXXXXXXXXXXMSAFNTSNILKFLNTLYVLYNLPFQKKRSIKYQ 694
            L  G++K+  +Y+                 FNT+N++K++N L + +    +K   I  Q
Sbjct: 979  LKTGNSKVLDSYENEVSEKYFDTFVVHHEFFNTNNLIKYINNLSLPFKELNEKSIDILNQ 1038

Query: 695  LIN*FLNNL-IYVPI 736
            LI  F ++L I VP+
Sbjct: 1039 LICNFRSDLEINVPL 1053


>UniRef50_Q54TJ6 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 855

 Score = 32.7 bits (71), Expect = 9.8
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 381 VNNFKMMLCFIESIFKFSLNNFQNCYRNIKV 289
           ++N +++   IE+ F FS  +F NC+ N+KV
Sbjct: 652 ISNLRIVKKLIENGFTFSKKSFNNCFENVKV 682


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,392,799
Number of Sequences: 1657284
Number of extensions: 11413607
Number of successful extensions: 18037
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18027
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)