Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f23r
         (743 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001870-1|AAN71641.1| 2053|Drosophila melanogaster SD05534p pro...    29   6.7  
AE013599-3786|AAF47145.2| 2053|Drosophila melanogaster CG3173-PA...    29   6.7  

>BT001870-1|AAN71641.1| 2053|Drosophila melanogaster SD05534p protein.
          Length = 2053

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 110  Y*NAINMGTLYLFSRSFRHHSKYRLV*NTTNSRIQCRYAFYHYKVSNILFFV 265
            Y N I   TL  +   F+HHS  +      N  +Q   A+ +Y  S+ L F+
Sbjct: 1749 YKNEIQ-NTLSCYFNFFKHHSNVKEACQMLNKFVQMLQAYINYNPSSALLFI 1799


>AE013599-3786|AAF47145.2| 2053|Drosophila melanogaster CG3173-PA
            protein.
          Length = 2053

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 110  Y*NAINMGTLYLFSRSFRHHSKYRLV*NTTNSRIQCRYAFYHYKVSNILFFV 265
            Y N I   TL  +   F+HHS  +      N  +Q   A+ +Y  S+ L F+
Sbjct: 1749 YKNEIQ-NTLSCYFNFFKHHSNVKEACQMLNKFVQMLQAYINYNPSSALLFI 1799


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,143,185
Number of Sequences: 53049
Number of extensions: 487709
Number of successful extensions: 580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)