Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f23r
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 202 FPYSV*VCILPLQSFEYTVF 261
           FPY V  C+L L S+ Y  F
Sbjct: 160 FPYDVQTCVLKLGSWTYDGF 179


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 611 TSNILKFLNTLYVLYNLPF 667
           T NI+KF+   Y+ Y  P+
Sbjct: 508 TFNIIKFVPVKYLTYEYPW 526


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 611 TSNILKFLNTLYVLYNLPF 667
           T NI+KF+   Y+ Y  P+
Sbjct: 561 TFNIIKFVPVKYLTYEYPW 579


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 243 FRIYCFL*WPMILFLK 290
           F ++  L WP++LF K
Sbjct: 374 FMLFIILYWPILLFKK 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,569
Number of Sequences: 438
Number of extensions: 3770
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)