Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f23f
         (561 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    24   1.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   3.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.6  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 278 VVT*YQVS--REQVHLSIHLSNKKKKNIFTY*LHLVFSKT*KSVRTWPNL 421
           VV+ Y  S  R ++H+ I L   K+ +++ +  +++   T    RTW  L
Sbjct: 48  VVSIYSKSFHRNEIHIKIVLMFFKEASLYCFNYYVIVVTTFYKRRTWTRL 97


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 252 WSVDVDELRWSLNTR*VANKSTYPYILAIRKK 347
           WSVD+D+ R S           YP I A+R++
Sbjct: 857 WSVDMDDFRGS------CGSGKYPLINAMRQE 882


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +1

Query: 73  FKIFNFNNKL 102
           FK++NFNN++
Sbjct: 417 FKLWNFNNQI 426


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,811
Number of Sequences: 336
Number of extensions: 2255
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)