Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f23f
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)             27   7.9  

>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +2

Query: 395 KSVRTWPNLNTYYCNGITFKLFE----KLYNYLKLKIVTKVQNKFY 520
           +SVR  P  N    N +  K++     K+YN L  KI   + NK Y
Sbjct: 314 RSVRHVPRFNNEIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIY 359



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +2

Query: 395 KSVRTWPNLNTYYCNGITFKLFE----KLYNYLKLKIVTKVQNKFY 520
           +SVR  P  N    N +  K++     K+YN L  KI   + NK Y
Sbjct: 407 RSVRHVPRFNNEIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIY 452


>SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 743

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 201 DLCALVCGP*NCNMRNYWSVDVDELRWSLNT 293
           DL  +V  P +C M+NY   DVD++R+ + T
Sbjct: 553 DLDTMVTVPLDCEMKNY-RKDVDKIRYLIQT 582


>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
          Length = 394

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -1

Query: 261 QPTSNYAYYNSR--VRRLKHISQKTL---LYRN*KKLFRILYINKLNNVYLNY 118
           Q   NY YYN+R  +RR +     T+   LY + +KL  +LY         NY
Sbjct: 199 QTARNYQYYNTRKTLRRQRETINTTIHAKLYTDSEKLSILLYTRNSTRTARNY 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,694,166
Number of Sequences: 59808
Number of extensions: 230094
Number of successful extensions: 381
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)