Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f23f
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   6.4  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   6.4  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 58  NNHIYFKIFNFNNKLVL*TYIIQINII 138
           NN+  +   N+N KL    YII I  I
Sbjct: 326 NNNYKYNYNNYNKKLYYKNYIINIEQI 352


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 554 YVKIFVYLNVLYKIY 510
           Y+ +FV + V YKI+
Sbjct: 212 YIPLFVMIQVYYKIF 226


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 58  NNHIYFKIFNFNNKLVL*TYIIQINII 138
           NN   +   N+N KL    YII I  I
Sbjct: 101 NNKYNYNNNNYNKKLYYKNYIINIEQI 127


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 190 TLQELKKTI*NL 155
           T++ELKKTI NL
Sbjct: 2   TIEELKKTIKNL 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,336
Number of Sequences: 438
Number of extensions: 3165
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)