Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f22r
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0449 + 3335408-3335479,3336310-3336389,3336911-3336989,333...    31   0.74 
02_03_0075 + 14846108-14847794,14847858-14848249                       28   6.9  
04_04_0308 + 24286923-24286927,24288430-24288907,24288980-242890...    28   9.1  

>01_01_0449 +
           3335408-3335479,3336310-3336389,3336911-3336989,
           3337342-3337423,3337820-3337976,3338660-3338717,
           3338718-3338828,3339211-3339257,3339820-3339948,
           3340750-3340834,3341264-3341344,3341881-3341886
          Length = 328

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 718 LLNFLWFLLRAVEQRHVRQFMVLKNWYAISIKRDPNYSIFLDNIGRIWFGIEIPS 554
           L+ F+ +LL  +E+     F  L+  Y  S   DP +   LD I   ++GI   S
Sbjct: 262 LIQFIKYLLPTLERDAYPLFRTLRQKYKTSTDHDPVFEELLDEIAAKFYGIRSQS 316


>02_03_0075 + 14846108-14847794,14847858-14848249
          Length = 692

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 682 EQRHVRQFMVLKNWYAISIKRDPNYSIFLDNIGRIW 575
           E + V Q  VL  +Y++   R PN S   +++GR W
Sbjct: 274 EMKQVGQLTVLARFYSL---RTPNLSALFEDMGRAW 306


>04_04_0308 +
           24286923-24286927,24288430-24288907,24288980-24289099,
           24289182-24289235,24289467-24289579,24289799-24290011,
           24290123-24290201,24290323-24290376,24290448-24290522,
           24291029-24291193,24291843-24291941,24292186-24292241,
           24292331-24292433,24293289-24293417,24293657-24293835,
           24293953-24293977,24294060-24294175,24294252-24294342
          Length = 717

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 615 GSLLMLIAYQFFSTINCRTCLCSTALSKNHKKFN 716
           G  +    YQ FS+ N   C+CS A     +KF+
Sbjct: 415 GYAMSKFLYQIFSSENTTGCICSLAKELTSRKFD 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,473,505
Number of Sequences: 37544
Number of extensions: 251294
Number of successful extensions: 332
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)