Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f22r
         (746 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001480-1|AAN71235.1|  339|Drosophila melanogaster LD21829p pro...    48   1e-05
AE014297-78|AAF52132.1|  339|Drosophila melanogaster CG9853-PA p...    48   1e-05
AE014296-1377|AAF50483.1|  447|Drosophila melanogaster CG7962-PA...    31   2.2  

>BT001480-1|AAN71235.1|  339|Drosophila melanogaster LD21829p
           protein.
          Length = 339

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = -2

Query: 733 PYIFPLLNFLWFLLRAVEQRHVRQFMVLKNWYAISIKRDPNYSIFLDNIGRIWF 572
           PY  PL+NFL+FL R ++ + V  F  L+  Y  S+KRD ++  ++  IG ++F
Sbjct: 235 PYKEPLVNFLYFLFRLIDAKRVAGFRALRKLYDPSLKRDTSFLKYVAKIGVLYF 288


>AE014297-78|AAF52132.1|  339|Drosophila melanogaster CG9853-PA
           protein.
          Length = 339

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = -2

Query: 733 PYIFPLLNFLWFLLRAVEQRHVRQFMVLKNWYAISIKRDPNYSIFLDNIGRIWF 572
           PY  PL+NFL+FL R ++ + V  F  L+  Y  S+KRD ++  ++  IG ++F
Sbjct: 235 PYKEPLVNFLYFLFRLIDAKRVAGFRALRKLYDPSLKRDTSFLKYVAKIGVLYF 288


>AE014296-1377|AAF50483.1|  447|Drosophila melanogaster CG7962-PA
           protein.
          Length = 447

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = -2

Query: 718 LLNFLWFLLRAVEQRHVRQFMVLKNWYAISIKRDPNYS-IFLDNI--GRIWFGIEI 560
           ++ F+WF+L  V++ +++QF +   W  +S+      S + + NI  G IWF + +
Sbjct: 189 IIGFVWFVLSLVKKYYIKQFSLFA-WTHVSLLIVVTQSYLIIQNIFEGLIWFIVPV 243


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,186,565
Number of Sequences: 53049
Number of extensions: 461626
Number of successful extensions: 690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)