Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f22f
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    69   5e-13
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    27   2.7  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    27   2.7  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    26   3.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   4.7  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    25   6.2  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   6.2  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   8.2  

>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 68.9 bits (161), Expect = 5e-13
 Identities = 40/136 (29%), Positives = 67/136 (49%)
 Frame = +1

Query: 142 YEAHQMYRTLYFRYLTQKKYPEXXXXXXXXXXXXXERDQQGSGADLAILFVEVLTKSETK 321
           YE HQM RTL  R +  KK+ +             E +Q GS ADLAI  ++V  K+   
Sbjct: 17  YEGHQMLRTLVNRQVKAKKHDDAVALLYSGAKTLFEIEQTGSAADLAIYMLDVYEKASYA 76

Query: 322 PNEEWVSKLAKLFELISSSVPERETFLTNSIKWSMDNNKKGDPLLHKKIAEVFWKEKKYT 501
            + +  ++   L  L  +    R+ ++   ++WS     +GD  +H  +A +F K K+  
Sbjct: 77  ASLDNKARALTLLGLFPAEEGARKQYVKRLLEWSKSAGPQGDKDVHFAVATMFVKWKEPA 136

Query: 502 AAHRHFLHSSDGSAYA 549
           +A +HF+  ++ SA A
Sbjct: 137 SAEKHFVLGNEKSARA 152


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 295 EVLTKSETKPNEEWVSKLAKLFELISSSVPERET 396
           E +  SE  P E+W   + +L+E++ S +  ++T
Sbjct: 42  ECIPPSEDSPLEDWEQPVQRLYEVLVSEIMLQQT 75


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 485 RKKSTQLLIDTFYTHRMVQHMLTCL*SYTQL 577
           R++ + LL DTFYT+  V H L  +  Y  +
Sbjct: 227 RRRQSILLHDTFYTYEEVYHDLQIVRGYVPI 257


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 461 LCRSGSPFLLLSIDHFIEFVRKVSRSGTLEL 369
           L RS  P+LL+S+D   +F++    SGTL L
Sbjct: 23  LLRSLKPYLLISVDD-DQFIKTNVASGTLRL 52


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +1

Query: 322  PNEEWVSKLAKLFELISSSVPERETFLTNSIK--WSMDNN--KKGD-PLLHKKIAEVFWK 486
            PN+    +L + F  +  S P  +TF++  +K  +S D+N  ++GD     KK+ EV   
Sbjct: 986  PNDSKNKELNRHFLKVDDSAPLDDTFMSKKVKLDFSSDSNVSERGDYDDNAKKVDEVISI 1045

Query: 487  EK 492
            EK
Sbjct: 1046 EK 1047


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +1

Query: 52  CNKNIMATRGERGVVRVLDKLEASINSGQY 141
           C KN+++      +++ L++++   NSGQ+
Sbjct: 51  CQKNVISEEELNSILKGLEQIQREWNSGQF 80


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = -1

Query: 500  VYFFSFQNTSAIFLCRSGSPFLLLSIDHFIEFVRKVSRSGTLELINSNNFANFETHSSLG 321
            V+    Q    I L  S SPF+L      +E++ + S    + +    NF+N     +L 
Sbjct: 1418 VFLLCAQECCRILLTDSKSPFILEVFSAILEYICQASTKTAINVSLYWNFSNDLEKLNLP 1477

Query: 320  LVSDFVK 300
            ++   ++
Sbjct: 1478 IILSLIR 1484


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 421 SMDNNKKGDPLLH-KKIAEVFWKEKKYTAAHRHFLHSSDGSAYANMLIELHTTK 579
           S+D N+K    +H  ++  V +  K +  A + + H+ DG +       LH+ K
Sbjct: 129 SIDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQFWQHTGDGISSRRAAAFLHSYK 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,797
Number of Sequences: 5004
Number of extensions: 54044
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)