Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f21f
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 84 1e-17
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 83 2e-17
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 61 9e-11
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 43 3e-05
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 34 0.015
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 27 2.3
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 2.3
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 25 5.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 5.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 5.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 5.4
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 25 7.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 7.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 7.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 7.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 7.2
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 25 7.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 7.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 7.2
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 25 7.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 7.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 7.2
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 9.5
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 83.8 bits (198), Expect = 1e-17
Identities = 39/92 (42%), Positives = 56/92 (60%)
Frame = +1
Query: 124 FIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGF 303
F+++AIS + V VFSKS+CP+CK AK+ K P K EL++ ++G+ IQ L + T
Sbjct: 8 FVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQ 67
Query: 304 RTVPQVFINGNCVGGGSDVKALYESGKLEPML 399
TVP +F +GG SD+ L SG L M+
Sbjct: 68 STVPSIFFRNQFIGGNSDLNKLRSSGTLTKMI 99
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 83.4 bits (197), Expect = 2e-17
Identities = 37/94 (39%), Positives = 61/94 (64%)
Frame = +1
Query: 115 IQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQL 294
++ F+ A++ + VVVF+KSYCPYC + V K +V +++ ++G+ IQ L +
Sbjct: 4 VESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKK 63
Query: 295 TGFRTVPQVFINGNCVGGGSDVKALYESGKLEPM 396
TG RTVP +FI+ VGG SD +AL++ G+L+ +
Sbjct: 64 TGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSL 97
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 61.3 bits (142), Expect = 9e-11
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Frame = +1
Query: 133 EAISKDKVVVFSKSYCPYCKLAKDVFE---KVKQPIKVIELNERDDGNTIQDNLAQLTGF 303
E ++ V++FS+ CPY AK + ++ P V+E+ + + ++D L+ ++
Sbjct: 61 EVFLENPVIIFSRPGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDI 120
Query: 304 RTVPQVFINGNCVGGGSDVKALYESGKLEPML 399
T+P +F+ G+ +GG V+ALY+ KL+ L
Sbjct: 121 STMPNIFVGGHSIGGSDSVRALYQEEKLQSTL 152
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 42.7 bits (96), Expect = 3e-05
Identities = 26/105 (24%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Frame = +1
Query: 106 SIDIQQFIKEAISKDKVVVFSKS-----YCPYCKLAKDVF--EKVKQPIKVIELNERDDG 264
S +Q +++A+ +D +V+F K C + A + E V K++ N +
Sbjct: 22 STQTRQALEQAVKEDPIVLFMKGTPTRPMCGFSLKAIQILSLENVASD-KLVTYNVLSN- 79
Query: 265 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 399
+ +++ + + + + T+PQ++ING VGG + ++++SG+L +L
Sbjct: 80 DELREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.9 bits (74), Expect = 0.015
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 265 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 399
++++ L + + T PQ++I G VGG V + E+G+L+ ML
Sbjct: 198 DSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +2
Query: 170 NLTVLTVSWQKMFLRK*SNQLKL--LS*MNVMMETPFKIISHN*LVSELYLK 319
N T+ ++S K F R+ N + + LS N +ETPF + H+ +VSE +++
Sbjct: 36 NNTIDSLSIAKQF-REIKNNINISHLSRENYWVETPFGKVFHSEVVSEEFMQ 86
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 493 NLKRK*HFICTPKYKFKYANNNKTI 419
N K HF+C KF+ NN K++
Sbjct: 57 NSKANNHFLCNSPLKFEIFNNEKSV 81
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 5.4
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +1
Query: 28 DSYFHLEIQYMGSQSGKITRSSKMAGSIDIQQFIKEAIS--KDKVVVFSKSYCPYCKLAK 201
DS + G + KI S + +D F K + KD +V F +C YCK
Sbjct: 119 DSLTQFVSEKTGIKKRKIVLPSNVV-ELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLA 177
Query: 202 DVFEKVKQPIK 234
+E + + K
Sbjct: 178 PTYETLGKVFK 188
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 148 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 240
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 148 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 240
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 148 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 240
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 193 LAKDVFEKVKQPIK-VIELNERDDGNTIQDNLAQLTGFRTV 312
L K V + PI+ + N+ G+TI LA +TG RT+
Sbjct: 381 LLKKVAQLADVPIQSFVVRNDSPCGSTIGPKLAAMTGMRTL 421
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 148 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 240
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 148 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 240
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 148 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 240
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 148 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 240
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 301 NQSVVRDYLEWCFHH 257
+ +V+R LEWC HH
Sbjct: 47 SSNVLRKVLEWCEHH 61
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 148 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 240
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 148 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 240
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 7.2
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +1
Query: 106 SIDIQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQ------PIKVIELNERDDGN 267
S + ++F+K +VVF +C YCK ++K+ P+ ++ + D N
Sbjct: 38 SKNFRKFVKA--KGPSLVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDA--DQN 93
Query: 268 TIQDNLAQLTGFRTVPQVF 324
+ Q+ GF T+ V+
Sbjct: 94 RAVCSQYQVQGFPTIKLVY 112
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 148 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 240
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 148 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 240
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 266 FPSSRSFNSITLIGCFT 216
FP +SF S+ GCFT
Sbjct: 964 FPIMKSFTSLLAYGCFT 980
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,613
Number of Sequences: 5004
Number of extensions: 44629
Number of successful extensions: 146
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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