Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f21f
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)             86   2e-17
SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)           82   3e-16
SB_45748| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)          42   2e-04
SB_45745| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)          42   2e-04
SB_1233| Best HMM Match : DUF547 (HMM E-Value=0)                       42   2e-04
SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)          40   0.001
SB_20536| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.009
SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)                31   0.46 
SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)          31   0.80 
SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_17581| Best HMM Match : HHH (HMM E-Value=4.2)                       30   1.4  
SB_15291| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)                   28   4.2  
SB_8005| Best HMM Match : Glutaredoxin (HMM E-Value=0.00023)           27   7.4  
SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_3985| Best HMM Match : C2 (HMM E-Value=0)                           27   7.4  
SB_42899| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_16971| Best HMM Match : zf-C2H2 (HMM E-Value=5.8e-36)               27   9.8  
SB_52862| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
          Length = 1037

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 41/111 (36%), Positives = 67/111 (60%)
 Frame = +1

Query: 70  SGKITRSSKMAGSIDIQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELN 249
           S +   +  MA    IQ+ I+++I+ + V++FSKS+CP+CK  K +FE +      +EL+
Sbjct: 551 SDRSPEAKVMAPVPQIQRLIEDSINNNAVMIFSKSFCPFCKKVKAIFESINVQYTAMELD 610

Query: 250 ERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPMLI 402
             D+G  IQ+ L + +G +TVP V+I GN VGG   +  L E  K+  ++I
Sbjct: 611 LVDNGPAIQEALLEKSGQKTVPNVYIRGNHVGGSDIITKLQEENKILGLII 661


>SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)
          Length = 111

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +1

Query: 124 FIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVK-QPIKVIELNERDDGNTIQDNLAQLTG 300
           F++     + +VVFSK+ C +  +AK +   V    + V EL +R+DG+ IQD L +LTG
Sbjct: 9   FVRSVTRSNNIVVFSKTACSFSIMAKKLLRDVGVSEMVVYELEQREDGHFIQDALKELTG 68

Query: 301 FRTVPQVFINGNCVGGGSDVKALYESGKLEPML 399
             TVP VF+ G  +GGG +   LY+SGKL+ +L
Sbjct: 69  RGTVPNVFVKGQSIGGGMETAELYQSGKLKQLL 101


>SB_45748| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)
          Length = 152

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = +1

Query: 127 IKEAISKDKVVVFSKSYC--PYCKLAKDVFEKVKQP--IKVIELNERDDGNTIQDNLAQL 294
           I E + KDKVVVF K     P C  +  V + ++     K    N  DD   ++  + + 
Sbjct: 41  IGETVKKDKVVVFMKGVPSQPMCGFSNAVVQILRMHGVDKFTSFNILDD-EELRSRIKEF 99

Query: 295 TGFRTVPQVFINGNCVGGGSDVKALYESGKL 387
           + + T+PQV+I G  VGG   +  +++ G L
Sbjct: 100 SEWPTIPQVYIGGEFVGGCDIMIKMHQEGDL 130


>SB_45745| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)
          Length = 152

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = +1

Query: 127 IKEAISKDKVVVFSKSYC--PYCKLAKDVFEKVKQP--IKVIELNERDDGNTIQDNLAQL 294
           I E + KDKVVVF K     P C  +  V + ++     K    N  DD   ++  + + 
Sbjct: 41  IGETVKKDKVVVFMKGVPSQPMCGFSNAVVQILRMHGVDKFTSFNILDD-EELRSRIKEF 99

Query: 295 TGFRTVPQVFINGNCVGGGSDVKALYESGKL 387
           + + T+PQV+I G  VGG   +  +++ G L
Sbjct: 100 SEWPTIPQVYIGGEFVGGCDIMIKMHQEGDL 130


>SB_1233| Best HMM Match : DUF547 (HMM E-Value=0)
          Length = 382

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 26/85 (30%), Positives = 46/85 (54%)
 Frame = +1

Query: 145 KDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVF 324
           K +V +FS + CP+C  AK      +  ++ +++N        Q+ + + +G RTVPQ+F
Sbjct: 2   KGRVTIFSITGCPFCVRAKTKLRD-ELNLEFVDINLDRHPERRQEAMER-SGKRTVPQIF 59

Query: 325 INGNCVGGGSDVKALYESGKLEPML 399
            N   VGG  D+  L  + K+E ++
Sbjct: 60  FNNIHVGGFDDLDKL-SADKMEELI 83


>SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)
          Length = 374

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 22/73 (30%), Positives = 37/73 (50%)
 Frame = +1

Query: 187 CKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKA 366
           C+  K +F+ +   I   ++    +     D   Q      VPQVF+NG C+GG  ++  
Sbjct: 239 CRFVKKLFDNLNVEIDERDIFIHKEHQVELDRRLQEEK-APVPQVFVNGICLGGSKELLH 297

Query: 367 LYESGKLEPMLIG 405
           L E+G+L+ +L G
Sbjct: 298 LNETGELKELLSG 310


>SB_20536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 36

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +1

Query: 310 VPQVFINGNCVGGGSDVKALYESGKLEPML 399
           VPQV ING  +GGG++ + L  SGKL  ML
Sbjct: 1   VPQVHINGKFIGGGTETEDLERSGKLLEML 30


>SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)
          Length = 1031

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 247 NERDDGNTIQDNLAQLTGFRTVPQVFING 333
           +E DDG          TGF+T PQV +NG
Sbjct: 490 SENDDGRKAWKRFHDRTGFQTTPQVVVNG 518


>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 20/72 (27%), Positives = 38/72 (52%)
 Frame = +1

Query: 151 KVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFIN 330
           +V + +K  C +C  AK   +   + ++  E+    +G +   +L  ++G  T PQVF++
Sbjct: 172 RVTLITKPGCSHCTRAKVALQN--KGLRYEEIVLGVNGVSFS-SLNAISGQGTTPQVFVD 228

Query: 331 GNCVGGGSDVKA 366
           G  VG   D++A
Sbjct: 229 GVHVGTADDLEA 240


>SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 184 YCKLAKDVFEKVKQPIKVIELNERDDGNT---IQDNLAQLTGFRT 309
           Y KLA D+ E ++  IK+I+L ER+  NT   +Q  + +   +RT
Sbjct: 236 YEKLASDLLEWIE--IKIIQLGEREFANTLLGVQQQMLEFNQYRT 278


>SB_17581| Best HMM Match : HHH (HMM E-Value=4.2)
          Length = 361

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 148 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTV 312
           DK     + Y   C+  +  F K   P+K+  LN+  +G  I D +  L G+  V
Sbjct: 80  DKTKAVKEEYKRQCEANEQFFVKEAAPVKMAPLNDPSEGKIILD-IKGLKGYELV 133


>SB_15291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 747

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/66 (22%), Positives = 30/66 (45%)
 Frame = +1

Query: 61  GSQSGKITRSSKMAGSIDIQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 240
           G++ G   + +     +  +Q ++E   +D +V  ++ YC  CK      E  K+ +K +
Sbjct: 52  GNRRGSRNKPTYYEPKVSAKQRVEEFKGEDLIVRNNEVYCAACKEVSKKHELNKEKLKKL 111

Query: 241 ELNERD 258
              E D
Sbjct: 112 GKREED 117


>SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)
          Length = 393

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 348 TSHTVAIYKDLRYSSETSQLCEIILNGVS 262
           T HT +IY  L+Y   + + CE IL+ ++
Sbjct: 326 TPHTKSIYMALKYKVHSFKACETILDAIT 354


>SB_8005| Best HMM Match : Glutaredoxin (HMM E-Value=0.00023)
          Length = 271

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/86 (20%), Positives = 36/86 (41%)
 Frame = +1

Query: 133 EAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTV 312
           EA  + K+ ++    CP+C   +   E        +E+N        +  +   T +R V
Sbjct: 89  EASHQPKITLYQYQTCPFCCKVRAYLEYFGIDYTKVEVNP-----LTRKEIEFSTEYRKV 143

Query: 313 PQVFINGNCVGGGSDVKALYESGKLE 390
           P   ++G   GG +  +A   + +L+
Sbjct: 144 PIAIVDGKQPGGSTSSRAAATAVELQ 169


>SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 265 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVK 363
           NT  +N+  L GF+  P VF++  C    S +K
Sbjct: 280 NTEHENVKDLPGFKIPPNVFLDSVCQKIKSSIK 312


>SB_3985| Best HMM Match : C2 (HMM E-Value=0)
          Length = 835

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 408 NFKLIVLLLFAYLNLYFGVHIKCYLRFKLIQGCLCSYIYVLTNP 539
           +F  IV++L  +++  F +  K   R  ++Q  + SYI  + NP
Sbjct: 127 SFAWIVMILMIFVSWQFEIEKKTKHRENMVQAHMSSYIDKIQNP 170


>SB_42899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 379 QIHTML*HQSHLPHSCHL 326
           +IH +  H+ H PH CH+
Sbjct: 302 RIHVLHVHEKHRPHECHV 319


>SB_16971| Best HMM Match : zf-C2H2 (HMM E-Value=5.8e-36)
          Length = 477

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 379 QIHTML*HQSHLPHSCHL 326
           +IH +  H+ H PH CH+
Sbjct: 291 RIHVLHVHEKHRPHECHV 308


>SB_52862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 220 KQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESG 381
           + PI ++ +NE    + + DN   L+G+    Q+       GGG  V     SG
Sbjct: 39  ENPIDILAINETKLDDNVSDNEVHLSGYE---QIIRRDRTSGGGGRVCFYVRSG 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,730,029
Number of Sequences: 59808
Number of extensions: 298793
Number of successful extensions: 733
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)