Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f21f
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   0.86 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   0.86 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   0.86 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.6  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   6.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   6.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   6.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.1  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 541 NGFVST*IYEHRQP*INLKRK*HFICTPKYKFKYANNNKTINLKFI 404
           +GF ST +Y +    +   ++  F   P YK+KY N    + ++ +
Sbjct: 295 SGFYSTIMYSNG---VTFPQRNRFSSLPYYKYKYLNVINALEMRLM 337


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 541 NGFVST*IYEHRQP*INLKRK*HFICTPKYKFKYANNNKTINLKFI 404
           +GF ST +Y +    +   ++  F   P YK+KY N    + ++ +
Sbjct: 295 SGFYSTIMYSNG---VTFPQRNRFSSLPYYKYKYLNVINALEMRLM 337


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 407 YPINIGSNFPDSYNALTSEP 348
           YPI  G +FP  Y   T+ P
Sbjct: 384 YPIGSGGSFPSLYPMATTSP 403


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 386 NFPDSYNALTSEPPPTQLPFIKT 318
           N  D+Y ++ S P  T LPF+ T
Sbjct: 917 NMLDTYESVHSFPTETGLPFVYT 939


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 384 FSRFIQCFNIRATSHTVAIYKDLRYSSETSQL 289
           F   IQ +N+   SHTV  +  L+   E S L
Sbjct: 64  FGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHL 95


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 454 YKFKYANNNKTINLK 410
           YK+ Y NNN   N K
Sbjct: 96  YKYNYNNNNYNNNCK 110


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 454 YKFKYANNNKTINLK 410
           YK+ Y NNN   N K
Sbjct: 96  YKYNYNNNNYNNNCK 110


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 454 YKFKYANNNKTINLK 410
           YK+ Y NNN   N K
Sbjct: 96  YKYNYNNNNYNNNCK 110


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 454 YKFKYANNNKTINLK 410
           YK+ Y NNN   N K
Sbjct: 96  YKYNYNNNNYNNNCK 110


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 468 IKCYLRFKLIQGCL 509
           +  Y+RFKL+  C+
Sbjct: 58  LNAYVRFKLVTDCI 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,101
Number of Sequences: 438
Number of extensions: 3111
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)