Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f20r
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   2.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.8  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    27   3.7  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    26   6.5  

>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 195 NDKTQLNYSNILLLFECLQCMHDFVTEVSPLILLHRCRTMSSR 323
           N+ T  N+  I    E L+C+ D +  ++ ++ L  CR    R
Sbjct: 365 NEDTSTNFVTIKQEKELLKCLCDTLNAIAHILFLKHCRKSDRR 407


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 208  NLTIQIYYYFLNVYNACMTLLQKFRHLFYYI 300
            NL   +  YF+NV+N+ +  L K   LF+ +
Sbjct: 3857 NLAESVLDYFINVHNSNLDSLSKISTLFFMV 3887


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 150 TVLILIFTL*DFYCDNDKTQLNYSNILLLFE 242
           TVL+++  L D     DK  L+YS+IL LFE
Sbjct: 88  TVLVMLMIL-DMMLYIDKATLSYSSILGLFE 117


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 21  KFNYELAQTKVTAGKPPPNVT 83
           K  YEL Q  +   + PPNVT
Sbjct: 157 KIEYELEQVGIRLNRQPPNVT 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,678
Number of Sequences: 5004
Number of extensions: 60127
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)