Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f20f
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 123 2e-29
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 63 3e-11
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 55 1e-08
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 54 2e-08
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 44 2e-05
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 36 0.004
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 34 0.020
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 30 0.25
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 29 0.44
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 29 0.58
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 29 0.58
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 29 0.77
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac... 28 1.0
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 28 1.3
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 28 1.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 28 1.3
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 27 1.8
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 1.8
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|... 27 1.8
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 1.8
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 27 2.3
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 27 2.3
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 2.3
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 27 3.1
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 27 3.1
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 3.1
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 27 3.1
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.1
SPAC12G12.05c |taf9||transcription initiation factor Taf9|Schizo... 26 4.1
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 4.1
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 26 4.1
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 5.4
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 7.2
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 25 7.2
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 7.2
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 25 7.2
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 9.5
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |... 25 9.5
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 9.5
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 25 9.5
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 25 9.5
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 123 bits (297), Expect = 2e-29
Identities = 59/109 (54%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Frame = +1
Query: 325 QEDSADYCKGGYHPVKIGDLFLNR-YHVTRKLGWGHFSTVWLCWDLVDKRFVALKVVKSA 501
+E++ DY GGYHPV IG+ F +R Y V RKLGWGHFSTVWL +D KR VALKVV+SA
Sbjct: 56 EENAEDYHYGGYHPVYIGEEFHHRRYVVERKLGWGHFSTVWLAYDRAAKRRVALKVVRSA 115
Query: 502 PHFTETALDEIKILRAVRDSDPTDPKRNKTVQLLNDFKITGVNGTHVCM 648
H+ ET++DEI+IL+ +R+ D + + LL+ F G NG HVCM
Sbjct: 116 EHYRETSIDEIRILQKIREGDEKHLGKKHIISLLDYFVHRGPNGAHVCM 164
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 63.3 bits (147), Expect = 3e-11
Identities = 33/86 (38%), Positives = 49/86 (56%)
Frame = +1
Query: 355 GYHPVKIGDLFLNRYHVTRKLGWGHFSTVWLCWDLVDKRFVALKVVKSAPHFTETALDEI 534
G++ V F NRY V R LG G F V C+D R A+KV ++ P + E +L E+
Sbjct: 348 GHYKVVPNSKFANRYTVVRLLGHGTFGKVIQCYDQSTGRHCAIKVTRAIPKYREASLIEL 407
Query: 535 KILRAVRDSDPTDPKRNKTVQLLNDF 612
++L+ + SDPT+ NK +QL + F
Sbjct: 408 RVLQTIAHSDPTN--ENKCIQLRDYF 431
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 54.8 bits (126), Expect = 1e-08
Identities = 31/93 (33%), Positives = 48/93 (51%)
Frame = +1
Query: 295 DEQYTSDDEEQEDSADYCKGGYHPVKIGDLFLNRYHVTRKLGWGHFSTVWLCWDLVDKRF 474
D++ ++D+ + + G + V +GD RY V LG G F V C D +
Sbjct: 665 DKRRSADENTSSNFGFDDERGDYKVVLGDHIAYRYEVVDFLGKGSFGQVLRCIDYETGKL 724
Query: 475 VALKVVKSAPHFTETALDEIKILRAVRDSDPTD 573
VALK++++ F AL E KIL+ +R+ DP D
Sbjct: 725 VALKIIRNKKRFHMQALVETKILQKIREWDPLD 757
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 54.0 bits (124), Expect = 2e-08
Identities = 36/111 (32%), Positives = 55/111 (49%)
Frame = +1
Query: 316 DEEQEDSADYCKGGYHPVKIGDLFLNRYHVTRKLGWGHFSTVWLCWDLVDKRFVALKVVK 495
DE E D G Y ++ GD L RY + +G G F V C D + VA+KV+K
Sbjct: 492 DECNEALFDDDNGDYKAIQ-GDHLLYRYEIIDTVGKGSFGQVLKCIDHKRGQVVAIKVIK 550
Query: 496 SAPHFTETALDEIKILRAVRDSDPTDPKRNKTVQLLNDFKITGVNGTHVCM 648
+ F L E+ IL+ + ++DP D +N ++ L+ F G H+C+
Sbjct: 551 NRQKFHGQTLVEVGILKRLCEADPAD--KNNVIRYLSHFDFRG----HLCI 595
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 44.0 bits (99), Expect = 2e-05
Identities = 25/85 (29%), Positives = 45/85 (52%)
Frame = +1
Query: 394 RYHVTRKLGWGHFSTVWLCWDLVDKRFVALKVVKSAPHFTETALDEIKILRAVRDSDPTD 573
+Y + LG G F V C DL ++ VA+KV+K+ P F + E+ IL + + +
Sbjct: 129 KYLILDTLGHGTFGQVARCQDLKTQQIVAIKVIKNKPAFYNQCVMEVSILELLNNKYDPE 188
Query: 574 PKRNKTVQLLNDFKITGVNGTHVCM 648
KR+ ++L + F ++ H+C+
Sbjct: 189 DKRH-LIRLYDQF----MHKNHLCL 208
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 36.3 bits (80), Expect = 0.004
Identities = 24/81 (29%), Positives = 42/81 (51%)
Frame = +1
Query: 322 EQEDSADYCKGGYHPVKIGDLFLNRYHVTRKLGWGHFSTVWLCWDLVDKRFVALKVVKSA 501
+ +D+ D +G Y V + +L +RY V LG G FSTV D + A+K++++
Sbjct: 135 DMQDNWDDIEGYYKVVLMEELD-SRYIVQSNLGKGMFSTVVSALDRNRNQTFAIKIIRNN 193
Query: 502 PHFTETALDEIKILRAVRDSD 564
+ L E+ IL ++ +D
Sbjct: 194 EVMYKEGLKEVSILERLQAAD 214
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 33.9 bits (74), Expect = 0.020
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 373 IGDLFLNRYHVTRKLGWGHFSTVWLCWDLVDKRFVALKVV---KSAPHFTETALDEIKIL 543
+G L YH+ KLG G F V+ D + ALK + F TA+ EIKIL
Sbjct: 28 VGCSHLTDYHLMEKLGEGTFGEVYKSQRRKDGKVYALKRILMHTEKEGFPITAIREIKIL 87
Query: 544 RAVR 555
++++
Sbjct: 88 KSIK 91
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 30.3 bits (65), Expect = 0.25
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 391 NRYHVTRKLGWGHFSTVWLCWDLVDKRFVALKVVKSAPHFTETALDEI 534
N Y + RKLG G F VW + V +A+K + ET +D+I
Sbjct: 7 NSYTLLRKLGSGSFGVVWKARENVSGDIIAIKQID-----LETGIDDI 49
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 29.5 bits (63), Expect = 0.44
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 367 VKIGDLFLNRYHVTRKLGWGHFSTVWLCWDLVDKRFVALKV--VKSAPHFTETALDEIKI 540
+KIG N+Y + RK+G G F ++L + V+ VA+K+ +K+ H E I
Sbjct: 6 IKIG----NKYRIGRKIGSGSFGQIYLGLNTVNGEQVAVKLEPLKARHHQLEYEFRVYNI 61
Query: 541 LR 546
L+
Sbjct: 62 LK 63
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 29.1 bits (62), Expect = 0.58
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 391 NRYHVTRKLGWGHFSTVWLCWDLVDKRFVALKV 489
N+Y + RK+G G F ++L ++V VA+K+
Sbjct: 9 NKYRIGRKIGSGSFGDIYLGTNVVSGEEVAIKL 41
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 29.1 bits (62), Expect = 0.58
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 397 YHVTRKLGWGHFSTVWLCWD 456
YH+ R++G G F++V LC+D
Sbjct: 10 YHIGREIGTGAFASVRLCYD 29
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 415 LGWGHFSTVWLCWDLVDKRFVALKVVKSAPHFTETALDEIK 537
LG G+F V L V+K+F A+KV+K L+ +K
Sbjct: 670 LGKGNFGKVMLAEYKVNKKFYAIKVLKKEAILKNEELESLK 710
>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 594 YGFVSLRIGGIAVSHCSQYFNFVQSRLRKM 505
YGF+ I IAVSHCS + +QS L+++
Sbjct: 210 YGFLMTVIAFIAVSHCSVGHSELQSFLQEL 239
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 397 YHVTRKLGWGHFSTVWLCWDLVDKRFVALKVV-KSAPHFTETALDEIKILRAVRD 558
+ ++G G + +VWL K VALK++ KS H +DEI+ + RD
Sbjct: 208 FQTITQVGQGGYGSVWLARKRDTKEIVALKIMNKSVLH----KMDEIRHVLTERD 258
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 394 RYHVTRKLGWGHFSTVWLCWDLVDKRFVALKVVK 495
RY + + LG G F+ V+L ++ +++ ALK +K
Sbjct: 31 RYRIQKLLGEGGFAFVYLVQNVSNEKLYALKKIK 64
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 250 EPTHSSSNETIEEDEDEQYTSDDEEQEDSADYCKGGYHPVKIGDLFLNRYHVTRKLG 420
+ S SN ++E++ED D ++ED D + ++ GD + Y+V+R G
Sbjct: 1701 DAARSDSNNSMEDEED------DVDEEDKEDKNRTVMRSIESGDSIQDVYNVSRIFG 1751
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 168 NFVSFFLRLYGEYSSIYIRFRTH 100
NF +F L EY ++Y++F +H
Sbjct: 756 NFTDWFASLGSEYENVYVKFISH 778
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 262 SSSNETIEEDED--EQYTSDDEEQEDSAD 342
SS +E+ E DED E+ DD+E D D
Sbjct: 238 SSGSESYERDEDVDEEEEEDDDENNDEGD 266
>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
Pef1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 288
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 397 YHVTRKLGWGHFSTVWLCWDLVDKRFVALKVVK-SAPHFT-ETALDEIKILRAVR 555
Y KLG G ++ V+ + V VALKV++ A T TA+ EI +++ +R
Sbjct: 3 YQRLEKLGEGTYAHVYKGQNRVTGEIVALKVIRIDADEGTPSTAIREISLMKELR 57
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 250 EPTHSSSNETIEEDEDEQYTSDDEEQEDSA 339
E ++ EE+EDE+ +DEE ED +
Sbjct: 101 EENEEEADANEEEEEDEEDDEEDEEDEDES 130
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 262 SSSNETIEEDEDEQYTSDDEEQEDSADYCKGG 357
+ +NE EEDE+ DDEE E+ D GG
Sbjct: 107 ADANEEEEEDEE-----DDEEDEEDEDESGGG 133
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 262 SSSNETIEEDEDEQYTSDDEEQEDSADYCKGGYHPVKIGDLFLNRYHVTR 411
+S N ++ED+ +S+DEE E+ G Y P +I + ++ TR
Sbjct: 138 ASENNVVKEDDKSSISSEDEE-EELRSAKDGIYRPPRIRAVTMDSEKRTR 186
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 391 NRYHVTRKLGWGHFSTVWLCWDLVDKRFVALKVV--KSAPHFTETALDEIKIL 543
++Y + +G G F +V+ D+ + VALKVV + ET EI L
Sbjct: 4 HQYRDLQLIGQGSFGSVFRAQDVESSKIVALKVVDLDATKDQIETLTQEINFL 56
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 256 THSSSNETI--EEDEDEQYTSDDEEQEDSADYCKGG 357
T+ S E + EED+ E S+DEE ++S D + G
Sbjct: 341 TYDSEAEWVADEEDDGEDLESEDEEVDNSDDIVEDG 376
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 382 LFLNRYHVTRKLGWGHFSTVWL 447
+F +RY V +KLG G F TV+L
Sbjct: 16 IFEDRYLVKQKLGDGSFGTVYL 37
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 259 HSSSNETIEEDEDEQYTSDDEEQE 330
+SS + I+ED + +YT+D+ E+E
Sbjct: 11 NSSEDSDIQEDAELEYTADNPEKE 34
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -3
Query: 264 TMRWF*TILVL-VTQTVSLANS-PVFFLAIFLFTNFVSFFLRLYGEYSSIYIRFRTHLVV 91
T+ WF I +T + N+ + F IF FVSF + G YS + F+ V+
Sbjct: 53 TLGWFSVICAFSITGSGLEVNTMSIPFYLIFGIFAFVSFTTQYLGIYSFSFQPFQLLNVI 112
Query: 90 IISLSPI 70
I SLS +
Sbjct: 113 IASLSMV 119
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 412 KLGWGHFSTVWLCWDLVDKRFVALKVVKSAPHFTETALDEIKILRAVRD 558
KLG G + +VWL +A+K++K + T L+E+K + RD
Sbjct: 167 KLGQGGYGSVWLAKKRNTHELLAMKMMKKS---TLQQLNEVKHILNERD 212
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/18 (44%), Positives = 17/18 (94%)
Frame = +1
Query: 283 EEDEDEQYTSDDEEQEDS 336
+++EDE+ ++D+E++EDS
Sbjct: 232 DDEEDEEGSADEEDEEDS 249
>SPAC12G12.05c |taf9||transcription initiation factor
Taf9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 163
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 250 EPTHSSSNETIEEDEDEQYTSDDEEQEDSADY 345
+P SNET + E+ +SD +ED D+
Sbjct: 127 QPNWIVSNETQQNQPKEENSSDSRMEEDKLDF 158
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 262 SSSNETIEED--EDEQYTSDDEEQEDSADYCKGGYHPVKIGDLFLN 393
+S ET EE+ E+E ++EE+E+ +Y K+GDL L+
Sbjct: 346 TSRIETQEEEIKEEEMEGEEEEEEEEVPNYESENELEDKVGDLSLS 391
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 250 EPTHSSSNETIEEDEDEQYTSDDEEQED 333
E + S E EE+E+E+ +DDE +E+
Sbjct: 306 EESASEEEEEEEEEEEEENEADDETREN 333
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 337 HYPPAPRRRWCIAHLRLPQLFRWKNYALVLDDSGSGYADRF 215
H R W ++HL P FR+ + ++ +AD F
Sbjct: 217 HISSRKRSNWILSHLETPTPFRYSHDQKIMIFDRLSWADSF 257
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 262 SSSNETIEEDEDEQYTSDDEEQEDSAD 342
SSSN + ED+ +SD E + S D
Sbjct: 272 SSSNSSDSEDDSSSDSSDSESESSSED 298
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 397 YHVTRKLGWGHFSTVWLCWDLV-DKRFVALKVVK 495
Y+V RK+G G F +V+L K VA+K +K
Sbjct: 36 YNVVRKVGDGTFGSVYLATTKTPSKEVVAIKSMK 69
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 427 HFSTVWLCWDLVDKRFVA-LKVVKSAPHFTETALDEIKILRAVRDSD 564
H S+ WLC+ L+D A + +++ TE D + + R+ SD
Sbjct: 600 HVSSDWLCYALIDDITDAFVPLIRGIETETEAIEDSVLVGRSEDSSD 646
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 268 SNETIEEDEDEQYTSDDEEQEDS 336
S+ +EEDED+ +S +EE DS
Sbjct: 348 SDLDVEEDEDDVESSSNEEVSDS 370
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 157 FFSSPVWRVLFYLHQI*NSFSSYYI 83
F+ S VW + +QI N+F + Y+
Sbjct: 1074 FYKSVVWTFTLFWYQIYNNFDANYL 1098
>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 250 EPTHSSSNETIEEDEDEQYTSDDEEQEDSAD 342
EP SSS+E ED+DE+ S E E + D
Sbjct: 180 EPLSSSSDE---EDDDEEQISKLESNEGAVD 207
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 358 IHPCSNPHYPPAP 320
+HPCS+P PAP
Sbjct: 60 VHPCSHPEDRPAP 72
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +1
Query: 250 EPTHSSSNETIEEDEDEQYTSDDEEQEDSADYCKGGYH 363
E +H SSN +++ + T+ E D G+H
Sbjct: 263 ETSHESSNSNLKKSSESGSTNHHNNHESDKDLHHEGHH 300
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 319 EEQEDSADYCKGGYHPVKIGDLFLNRYHVTR 411
E D D C+G HP++ LFL Y +T+
Sbjct: 77 EIMNDLLDMCRGVQHPLR--GLFLRHYLLTQ 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,848
Number of Sequences: 5004
Number of extensions: 50119
Number of successful extensions: 297
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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