Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f19r
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 363 e-100
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 39 0.003
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 33 0.17
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 29 2.8
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 2.8
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.7
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.7
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 28 6.4
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 6.4
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 6.4
Z30317-6|CAA82972.3| 193|Caenorhabditis elegans Hypothetical pr... 28 8.5
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 363 bits (892), Expect = e-100
Identities = 170/254 (66%), Positives = 201/254 (79%)
Frame = -1
Query: 770 KKHLKRLNXPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 591
KKHLKRL P WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E KI+
Sbjct: 5 KKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKIL 64
Query: 590 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 411
QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +KLCK
Sbjct: 65 TQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCK 124
Query: 410 VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 231
VK V T K VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL +TG
Sbjct: 125 VKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTG 184
Query: 230 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIR 51
GRN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G GIR
Sbjct: 185 GRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIR 244
Query: 50 LTIAEERDKRIAAK 9
L+IAEERDKR+A K
Sbjct: 245 LSIAEERDKRMAQK 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/65 (33%), Positives = 26/65 (40%)
Frame = -3
Query: 207 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 28
HHR E AH G HGTH H E H+ H G H + H P H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 27 QAHRS 13
+ H +
Sbjct: 460 EHHHA 464
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -3
Query: 207 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 43
HH E H H G HGTH H GH G H A A GH HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 37.5 bits (83), Expect = 0.010
Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Frame = -3
Query: 216 ARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHHR 40
A HH E H H G HGTH H GH G H A A GH H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH--HGE 521
Query: 39 RGAGQAHRSQ 10
G H +
Sbjct: 522 HGTHHGHHGE 531
Score = 36.7 bits (81), Expect = 0.018
Identities = 28/115 (24%), Positives = 37/115 (32%), Gaps = 2/115 (1%)
Frame = -3
Query: 351 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARG-HHRVPRETSR 178
HH + + + H P H ++ ++G H H G G HH P
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518
Query: 177 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 13
H H HG H H H G G H H P H G+ H +
Sbjct: 519 ---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHA 570
Score = 36.3 bits (80), Expect = 0.024
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Frame = -3
Query: 237 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 67
HG G+ G H T L H H G HGTH H H+ HE G H A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH 702
Query: 66 RQGHPP---HHRRGAGQAH 19
H HH G H
Sbjct: 703 HGHHDDKENHHHHGHHSKH 721
Score = 35.5 bits (78), Expect = 0.042
Identities = 27/115 (23%), Positives = 37/115 (32%), Gaps = 1/115 (0%)
Frame = -3
Query: 351 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRL 175
HH + + + H P H ++ ++G H E + H G G H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554
Query: 174 LRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQ 10
AH G HG H H G GVH + H H A H +
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVH-HGHHESHGHGHHAPAHHGHHGE 608
Score = 35.1 bits (77), Expect = 0.056
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -3
Query: 168 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 19
H AH HG H RH E H+ H G H H HH A H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH-GTHHGHHGEHHHAPAHHGH 441
Score = 33.9 bits (74), Expect = 0.13
Identities = 33/117 (28%), Positives = 40/117 (34%), Gaps = 2/117 (1%)
Frame = -3
Query: 351 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRL 175
HH + + + H P H ++ +G H V HG GHH P
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGV-------HHGHHESHGHGHH-APA----- 601
Query: 174 LRHCAHQGLHGTHL-RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQG 7
H H G HG H H H+ GH G H A H HH H S G
Sbjct: 602 --HHGHHGEHGVHHGHHGAGYGAHH--GHHGAHHHHA--PHHEHHEHHGDHHHGSHG 652
Score = 33.9 bits (74), Expect = 0.13
Identities = 27/100 (27%), Positives = 32/100 (32%)
Frame = -3
Query: 306 PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRH 127
P H ++ ++G+H Y GA HH P H G HG H H
Sbjct: 600 PAHHGHHGEHGVHHG-HHGAGYGAHHGHHGAH-HHHAPHHEHHEHHGDHHHGSHGVHHGH 657
Query: 126 EVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQG 7
GH G H H P H G AH G
Sbjct: 658 HGTHHSLAHHGHHGGHGTHHGAHHSPAH-HGHHGAHHEHG 696
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Frame = -3
Query: 207 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG-HPPHHRRGA 31
HH P H HG H H GH G H + A G H HH A
Sbjct: 461 HHHAPAHHGHHGEHHHAPAHHGHHGEH------GTHHGHHGSHHSPAHHGHHGEHHHAPA 514
Query: 30 GQAHRSQ 10
H +
Sbjct: 515 HHGHHGE 521
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Frame = -3
Query: 210 GHHRVPRETSRLLRHCAHQGLH----GTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 43
G H P H H G H H HE H+ H G H H P H
Sbjct: 411 GTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHH---GEHHHAPAH 467
Query: 42 RRGAGQAHRS 13
G+ H +
Sbjct: 468 HGHHGEHHHA 477
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = -3
Query: 168 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH--PPHHRRGAGQAHRSQG 7
HC G HG H R H G G R GH PPHH G++ G
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
Score = 29.5 bits (63), Expect(2) = 0.54
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -3
Query: 168 HC-AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 43
HC G HG H + R +R GH H R PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = -3
Query: 153 GLHGTHLRH-EVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGR 4
G HG H RH R GH G +R G P G H GR
Sbjct: 283 GRHGGHGRHGSCSGSPRGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGR 333
Score = 21.0 bits (42), Expect(2) = 0.54
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = -3
Query: 54 PPHHRRGAGQAHRSQGRR 1
PPH R G H G R
Sbjct: 450 PPHRRGGHCHHHHHNGHR 467
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = -1
Query: 467 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 336
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +2
Query: 20 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 139
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +2
Query: 20 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 139
C C PR C CR C +C C TRC T R C
Sbjct: 84 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 117
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +2
Query: 20 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 139
C C PR C CR C +C C TRC T R C
Sbjct: 85 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 118
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +2
Query: 20 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 139
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 249 LVYDHGRP*LGARGHHRVPRETSRLLRH 166
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 249 LVYDHGRP*LGARGHHRVPRETSRLLRH 166
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 56 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 145
C C+ A C P CP + + CS T R C+P
Sbjct: 54 CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 20 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 139
C C P+ C CR C +C C TRC T R C
Sbjct: 85 CCCCRPKCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 118
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 310 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 474
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>Z30317-6|CAA82972.3| 193|Caenorhabditis elegans Hypothetical
protein T16G12.3 protein.
Length = 193
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 237 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG 58
HG P LG++ H+ ++ AH+ LH E+ VH QG++ A G
Sbjct: 51 HGHPSLGSQSHNLTSAQSEG---RNAHKDLH--------ERHVHPSQGYQRHGSKAPAHG 99
Query: 57 HP 52
HP
Sbjct: 100 HP 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,345,024
Number of Sequences: 27780
Number of extensions: 449915
Number of successful extensions: 1495
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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