Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f18r
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    87   1e-18
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   5.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   5.1  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    24   6.8  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    24   9.0  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 86.6 bits (205), Expect = 1e-18
 Identities = 48/108 (44%), Positives = 64/108 (59%)
 Frame = -2

Query: 326 VKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 147
           +K  ELR +               L +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 146 KMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKE 3
             ++  R  YKNKKY PLDLR KKTRA+R+ALT +E   K  ++ +KE
Sbjct: 63  SNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKE 110


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -2

Query: 125 NHYKNKKYKPLDLRAKKTRAMRKAL---TKHEAK 33
           +H KN++Y  L+ + +K     KAL   TKH  K
Sbjct: 35  SHIKNRQYYILEKKIRKLMFAMKALLEETKHSTK 68


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -2

Query: 158 VYHQKMKVN---LRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK 33
           VYHQK K+N   L    + +K  PL+ R      + K +T    K
Sbjct: 79  VYHQKTKINDKLLSETEQLRKIYPLESRVFPKPTIVKEITNERTK 123


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -2

Query: 140 KVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKE 3
           K  +    KNK  +  D+  ++ RA  +  T H ++   +E  ++E
Sbjct: 519 KEKMEREMKNKNLELADMILERDRARHELETMHRSQRDKQESTERE 564


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 177 SFSYNTDLGQFRSNSTSNFSNPK 245
           +F+Y+ D G FR  + +NF +P+
Sbjct: 262 AFNYHFDNGVFRGLAFANFHSPE 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,665
Number of Sequences: 5004
Number of extensions: 17860
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)