Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f18r
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 94 4e-20
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 55 2e-08
12_02_0172 - 14891923-14892102,14892894-14892980 29 1.2
12_01_0152 - 1168928-1169377 28 2.7
11_01_0155 - 1287003-1287452 28 2.7
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797... 28 2.7
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 27 4.8
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 6.3
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 26 8.4
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 26 8.4
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 26 8.4
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 93.9 bits (223), Expect = 4e-20
Identities = 51/99 (51%), Positives = 62/99 (62%)
Frame = -2
Query: 335 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 156
M ++K ELR K+ L+ LRVAKVTGG +KLSKI+VVR +IARV V
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 155 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHE 39
QK + LR YK K PLDLR KKTRA+R+ LTKH+
Sbjct: 61 ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQ 99
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 55.2 bits (127), Expect = 2e-08
Identities = 40/106 (37%), Positives = 53/106 (50%)
Frame = -2
Query: 347 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIAR 168
VTV M ++K LR ++ L+ LRVA+VTGG +KLS I+ VR A+
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162
Query: 167 VYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKI 30
Y K K PLDLR KKT A+R+ LTKH+ +
Sbjct: 163 AY-------------KKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195
>12_02_0172 - 14891923-14892102,14892894-14892980
Length = 88
Score = 29.1 bits (62), Expect = 1.2
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = -2
Query: 239 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYKPL---DLRAKK 75
+A + GV K+S A R +V H+ +++ RNH ++KY+ + +
Sbjct: 1 MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRSSLLGETPGRS 60
Query: 74 TRAMRKA-LTKHEAKIKXEER 15
RA K +TK+ AK E++
Sbjct: 61 RRAKTKGFVTKNRAKPGDEDQ 81
>12_01_0152 - 1168928-1169377
Length = 149
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 233 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 144
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>11_01_0155 - 1287003-1287452
Length = 149
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 233 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 144
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>05_06_0020 +
24976990-24977167,24978763-24978874,24979634-24979722,
24979801-24979869,24979953-24980082,24980506-24980664,
24980767-24981127,24981343-24981452,24981753-24981909,
24983336-24983748,24983828-24984020,24984384-24986198
Length = 1261
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 92 DLRAKKTRAMRKALTKHEAKIKXEERDQK 6
D RAKK +A +K K+ KIK +ERD+K
Sbjct: 448 DKRAKKKQAKQK---KNNRKIKDKERDEK 473
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 206 LSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDL 87
+SK ++K + R + HQ +K +L K +Y PLDL
Sbjct: 610 ISKENSIKKQVTRYKM--HQHLKFHLGEISKTSEYDPLDL 647
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 141 HLLVIHNVNTCDSFSYNTDLG 203
H +HN N CDS Y D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 107 KYKPLDLRAKKTRAMRKALTKHEAK 33
KY+P D AKK R +++A + E K
Sbjct: 94 KYRPEDKAAKKERLLKRAQAEAEGK 118
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 107 KYKPLDLRAKKTRAMRKALTKHEAK 33
KY+P D AKK R +++A + E K
Sbjct: 78 KYRPEDKAAKKERLLKRAQAEAEGK 102
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 26.2 bits (55), Expect = 8.4
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +3
Query: 189 NTDLGQFRSNSTSNFSNPKI 248
NT+ G+++ + SNFS+P++
Sbjct: 1266 NTENGRYKGRAPSNFSSPRV 1285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,367,661
Number of Sequences: 37544
Number of extensions: 104345
Number of successful extensions: 278
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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