Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f18r
(375 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12465-1|AAA51648.1| 123|Homo sapiens ribosomal protein L35 pro... 120 2e-27
CR456877-1|CAG33158.1| 123|Homo sapiens RPL35 protein. 120 2e-27
BC094828-1|AAH94828.1| 123|Homo sapiens ribosomal protein L35 p... 120 2e-27
BC071915-1|AAH71915.1| 123|Homo sapiens ribosomal protein L35 p... 120 2e-27
BC010919-1|AAH10919.1| 123|Homo sapiens RPL35 protein protein. 120 2e-27
BC000348-1|AAH00348.1| 123|Homo sapiens ribosomal protein L35 p... 120 2e-27
AL354928-8|CAI39639.1| 123|Homo sapiens ribosomal protein L35 p... 120 2e-27
AL354928-7|CAI39638.1| 95|Homo sapiens ribosomal protein L35 p... 69 7e-12
AB046409-1|BAB21255.1| 33|Homo sapiens ribosomal protein L35 p... 53 3e-07
BC107597-1|AAI07598.1| 417|Homo sapiens LOC130940 protein protein. 29 4.9
BC015395-1|AAH15395.1| 255|Homo sapiens LOC130940 protein protein. 29 4.9
AK058105-1|BAB71668.1| 255|Homo sapiens protein ( Homo sapiens ... 29 4.9
AF458588-1|AAM49716.1| 591|Homo sapiens unknown protein. 29 4.9
AC019044-1|AAX88983.1| 361|Homo sapiens unknown protein. 29 4.9
>U12465-1|AAA51648.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 120 bits (289), Expect = 2e-27
Identities = 63/111 (56%), Positives = 74/111 (66%)
Frame = -2
Query: 335 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 156
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 155 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKE 3
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +K +++ +KE
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>CR456877-1|CAG33158.1| 123|Homo sapiens RPL35 protein.
Length = 123
Score = 120 bits (289), Expect = 2e-27
Identities = 63/111 (56%), Positives = 74/111 (66%)
Frame = -2
Query: 335 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 156
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 155 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKE 3
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +K +++ +KE
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>BC094828-1|AAH94828.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 120 bits (289), Expect = 2e-27
Identities = 63/111 (56%), Positives = 74/111 (66%)
Frame = -2
Query: 335 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 156
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 155 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKE 3
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +K +++ +KE
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>BC071915-1|AAH71915.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 120 bits (289), Expect = 2e-27
Identities = 63/111 (56%), Positives = 74/111 (66%)
Frame = -2
Query: 335 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 156
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 155 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKE 3
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +K +++ +KE
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>BC010919-1|AAH10919.1| 123|Homo sapiens RPL35 protein protein.
Length = 123
Score = 120 bits (289), Expect = 2e-27
Identities = 63/111 (56%), Positives = 74/111 (66%)
Frame = -2
Query: 335 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 156
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 155 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKE 3
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +K +++ +KE
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>BC000348-1|AAH00348.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 120 bits (289), Expect = 2e-27
Identities = 63/111 (56%), Positives = 74/111 (66%)
Frame = -2
Query: 335 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 156
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 155 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKE 3
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +K +++ +KE
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>AL354928-8|CAI39639.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 120 bits (289), Expect = 2e-27
Identities = 63/111 (56%), Positives = 74/111 (66%)
Frame = -2
Query: 335 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 156
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 155 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKE 3
+Q K NLR YK KKYKPLDLR KKTRAMR+ L KHE +K +++ +KE
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111
>AL354928-7|CAI39638.1| 95|Homo sapiens ribosomal protein L35
protein.
Length = 95
Score = 68.5 bits (160), Expect = 7e-12
Identities = 39/72 (54%), Positives = 44/72 (61%)
Frame = -2
Query: 329 KVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 150
K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V +
Sbjct: 2 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 61
Query: 149 QKMKVNLRNHYK 114
Q K NLR YK
Sbjct: 62 QTQKENLRKFYK 73
>AB046409-1|BAB21255.1| 33|Homo sapiens ribosomal protein L35
protein.
Length = 33
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = -2
Query: 245 LRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 147
LRVAKVTGG ASKLSKIRVVRK+IARV V +Q
Sbjct: 1 LRVAKVTGGAASKLSKIRVVRKSIARVLTVINQ 33
>BC107597-1|AAI07598.1| 417|Homo sapiens LOC130940 protein protein.
Length = 417
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 134 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIK 27
+++N +N KYKP+D + + K L AK+K
Sbjct: 14 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLK 49
>BC015395-1|AAH15395.1| 255|Homo sapiens LOC130940 protein protein.
Length = 255
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 134 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIK 27
+++N +N KYKP+D + + K L AK+K
Sbjct: 14 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLK 49
>AK058105-1|BAB71668.1| 255|Homo sapiens protein ( Homo sapiens
cDNA FLJ25376 fis, clone TST02010. ).
Length = 255
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 134 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIK 27
+++N +N KYKP+D + + K L AK+K
Sbjct: 14 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLK 49
>AF458588-1|AAM49716.1| 591|Homo sapiens unknown protein.
Length = 591
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 134 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIK 27
+++N +N KYKP+D + + K L AK+K
Sbjct: 14 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLK 49
>AC019044-1|AAX88983.1| 361|Homo sapiens unknown protein.
Length = 361
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 134 NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIK 27
+++N +N KYKP+D + + K L AK+K
Sbjct: 5 HMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLK 40
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,056,087
Number of Sequences: 237096
Number of extensions: 595291
Number of successful extensions: 1291
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2479134298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -