Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f17r
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 31 0.23
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 28 1.2
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 28 1.6
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 28 1.6
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 2.1
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 2.8
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc... 27 3.7
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 26 4.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.4
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 8.5
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -2
Query: 488 IRDKAMAFSITVLNNDYNEDAVLRLLQNLLKHKMMEEYSKVLQVLFNY 345
++ +A S+ N EDA + ++ L + + +Y +V+++LF Y
Sbjct: 310 LKSLGLATSLIAFNVSITEDADIIVVSTFLTEEGLTDYQRVIKILFEY 357
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 598 IIIH*YAFGIFVGPVIGFQIRCFQMNYLKHLRLYRIL 488
++++ AFGIF G VIG+ + LKH + YR++
Sbjct: 208 VVLYECAFGIFFGCVIGYLLSFI----LKHAQKYRLI 240
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 452 LNNDYNEDAVLRLLQNLLKHKMMEEYSKVLQVLFNYKLKNR 330
+ ND D ++R +Q KH E +KVL + +Y NR
Sbjct: 1 MENDEAFDRLIRKIQENQKHPSFEGSNKVLHLALSYLNTNR 41
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = -2
Query: 635 KKYVLDFSEQWSDHYPLICFW----YICWSSNWFSDQ 537
+K ++ F EQ + +CFW YI SSN++S++
Sbjct: 149 RKVIIRFCEQGYSFFYYLCFWFLGLYIYRSSNYWSNE 185
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -2
Query: 677 DSVLNRSEASLIVFKKYVLDFSEQ 606
+S LN+ EA L++F+K + ++ +Q
Sbjct: 1059 ESELNKKEAELVIFQKEITEYRDQ 1082
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 683 IQDSVLNRSEASLIVFKKY-VLDFSEQWSDHYPLICFWYICWSSN 552
I D +L+ + S ++ +LDFS SD Y L C + W N
Sbjct: 290 IYDIILDSIQESFSYVNRFLILDFSVSTSDPYTLACL--VSWRDN 332
>SPBC146.10 |mug57||meiotically upregulated gene
Mug57|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 568 FVGPVIGFQIRCFQMNYLKHLRLYRILSETR 476
F+ V+ F R M ++ RL+ +L+ETR
Sbjct: 18 FISAVLSFNQRPINMQEVREPRLFELLAETR 48
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 461 ITVLNNDYN-EDAVLRLLQNLLK-HKMMEEYSKVLQVL 354
+T+L N N R+L +LK HK+ EY K L VL
Sbjct: 128 LTILENPINLSQPKTRILLEVLKQHKLGHEYGKALFVL 165
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = -2
Query: 461 ITVLNNDYNEDAVLRLLQ-NLLKH-KMMEEYSKVLQVLFNYKLKNRDV--RGCTEIVRNC 294
+ ++ N N ++L +L + KH + +S L + N + + C+E++R C
Sbjct: 1222 LPLIKNANNTKSLLHILDITIRKHFPQFDNFSPELSTVTEAAKLNIEAIEQECSELIRGC 1281
Query: 293 QSLGISLSS 267
Q+L I S
Sbjct: 1282 QNLQIDCDS 1290
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -2
Query: 488 IRDKA--MAFSITVLNNDYNEDAVLRLLQNLLKHKMMEEYSKVL 363
+R++A + SIT++ E+A++R L +L + EEY +VL
Sbjct: 831 VREQAADLVSSITIVLKACGEEALMRKLGVVLYEYLGEEYPEVL 874
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,824
Number of Sequences: 5004
Number of extensions: 51987
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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