Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f17r
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7...    28   6.7  
02_05_0771 - 31628535-31629133,31629223-31629987,31630808-316309...    28   8.8  

>01_01_0001 +
           2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
           7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
           9504-9562
          Length = 616

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -2

Query: 443 DYNEDAVLRLLQNLLKHKMMEEYSKVLQVLFNYKLKNRDVRGCTEI 306
           D+NED +L L +N L+  +++  + +   +FN  +   +V+ C  +
Sbjct: 537 DFNEDVILHLEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRM 582


>02_05_0771 -
           31628535-31629133,31629223-31629987,31630808-31630905,
           31631024-31631193,31631297-31631596,31632208-31632618
          Length = 780

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 23/88 (26%), Positives = 36/88 (40%)
 Frame = -2

Query: 479 KAMAFSITVLNNDYNEDAVLRLLQNLLKHKMMEEYSKVLQVLFNYKLKNRDVRGCTEIVR 300
           K+   SI V+ ++ N+    RLL N      +      LQVL  Y    R + GC     
Sbjct: 419 KSQVSSIAVIGHNAND--ATRLLGNYFGPPCISVTP--LQVLQGYVKDTRFLAGCNSAAC 474

Query: 299 NCQSLGISLSSDQQGRYITLLINGSEDK 216
           N  S+G +        Y+ L +   +D+
Sbjct: 475 NVSSIGEAAQLASSVDYVVLFMGLDQDQ 502


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,674,091
Number of Sequences: 37544
Number of extensions: 252070
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)