Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f17r
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    30   2.0  
Z74027-4|CAA98423.1|  561|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z74027-3|CAA98422.1|  557|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U88178-7|ABA03111.1|  439|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC006676-2|AAK71382.3|  439|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical p...    28   7.9  

>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -3

Query: 217 NQKNLFQIKRNYLNLNFSFLISAICLK*YVFMYISGN 107
           N KN+F+  +N +NL++S ++++  L+ + F+    N
Sbjct: 643 NPKNIFKYSKNNINLSYSNIVASNILRTFTFINSKSN 679


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -3

Query: 217 NQKNLFQIKRNYLNLNFSFLISAICLK*YVFMYISGN 107
           N KN+F+  +N +NL++S ++++  L+ + F+    N
Sbjct: 643 NPKNIFKYSKNNINLSYSNIVASNILRTFTFINSKSN 679


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -3

Query: 217 NQKNLFQIKRNYLNLNFSFLISAICLK*YVFMYISGN 107
           N KN+F+  +N +NL++S ++++  L+ + F+    N
Sbjct: 689 NPKNIFKYSKNNINLSYSNIVASNILRTFTFINSKSN 725


>Z74027-4|CAA98423.1|  561|Caenorhabditis elegans Hypothetical
           protein C13G3.3b protein.
          Length = 561

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 524 HLKASDLKTNYWTNKYTKSILMDNDRSIV 610
           H + ++    YW N+Y  S++ DN R I+
Sbjct: 364 HFQVAERALYYWNNEYVMSLVADNARVII 392


>Z74027-3|CAA98422.1|  557|Caenorhabditis elegans Hypothetical
           protein C13G3.3a protein.
          Length = 557

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 524 HLKASDLKTNYWTNKYTKSILMDNDRSIV 610
           H + ++    YW N+Y  S++ DN R I+
Sbjct: 360 HFQVAERALYYWNNEYVMSLVADNARVII 388


>U88178-7|ABA03111.1|  439|Caenorhabditis elegans Hypothetical
           protein W09C3.1 protein.
          Length = 439

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/31 (35%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = -2

Query: 455 VLNNDYNEDAVLRL-LQNLLKHKMMEEYSKV 366
           ++NN++N+D ++R+ ++ LL  K M EY+ +
Sbjct: 119 LMNNNFNQDTIIRVCIRTLLAIKTMHEYTYI 149


>AC006676-2|AAK71382.3|  439|Caenorhabditis elegans Hypothetical
           protein M04F3.3 protein.
          Length = 439

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/31 (35%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = -2

Query: 455 VLNNDYNEDAVLRL-LQNLLKHKMMEEYSKV 366
           ++NN++N+D ++R+ ++ LL  K M EY+ +
Sbjct: 119 LMNNNFNQDTIIRVCIRTLLAIKTMHEYTYI 149


>AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical
           protein C45G7.4 protein.
          Length = 603

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 244 RCL*MAAKINQKNLFQIKRNYLNLNFSFLISAICLK 137
           RC     KI+QKNLF++ R  ++   +  ++ +CL+
Sbjct: 171 RCADCQRKISQKNLFRVSRYCVDCTSTSRMTIVCLE 206


>Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical
           protein F09C6.7 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 358 TCNTFEYSSIILCFNRFCRSLRTAXXXXXXFNTVMLNAIALSLIISCK 501
           TC+   ++  IL FN   + LRT        NT M+ +I +      K
Sbjct: 18  TCSLLYFTMYILIFNFTTKDLRTMKYFLYPSNTAMMISIGMGFATQAK 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,196,867
Number of Sequences: 27780
Number of extensions: 270571
Number of successful extensions: 702
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)