Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f17f
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    25   0.37 
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    24   0.85 
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    24   0.85 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   3.4  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 399 RIGGFRTIFNHMILDVYRIFLFGSLHNL 316
           R   F+T  N  ++DVY  FL  SL N+
Sbjct: 164 RTSFFKTFLNSCLMDVYYEFLLISLINI 191


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 201 QRYPHRIHFYSFVVITV 151
           +R+PHRIH Y  V   V
Sbjct: 20  KRFPHRIHSYFMVAFYV 36


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 201 QRYPHRIHFYSFVVITV 151
           +R+PHRIH Y  V   V
Sbjct: 20  KRFPHRIHSYFMVAFYV 36


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 377 FSTI*FWMFTVFFSLVL---CTICEDNESTTSTLVVKRH 270
           F TI F  F +   ++L   C I ++  S  +TLV+ +H
Sbjct: 238 FLTIIFLFFIIPLIILLILYCIIAKNLMSNAATLVLNKH 276


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,764
Number of Sequences: 336
Number of extensions: 2816
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)