Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f17f
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    28   1.2  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    27   1.6  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    27   2.1  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    27   2.7  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.6  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   4.8  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   6.3  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.3  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   8.4  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   8.4  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   8.4  

>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +1

Query: 388 STNPPMTDEERDNLIKELMSKNRNRQLETLVREMKNKRQFMNEETLKKLFKHYSLDGKPE 567
           S+   +T  E   L +E  + NRN  L++L      +R F+N    + L      DG   
Sbjct: 162 SSPSSITANEIARLCQE--ANNRNYLLQSLTSATDARRAFLNNPNYRLLSAIIFQDGPSN 219

Query: 568 MIIILQKYC 594
           +  +L K C
Sbjct: 220 LAFVLAKDC 228


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 355 IQNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVREMKN 495
           I N++ E      NP   +E R  ++KE + K R  ++ +  R   N
Sbjct: 416 IDNNLYEKARLIANPFSYEEHRQKIVKERLEKQRASKIRSQNRPKVN 462


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 433 KELMSKNRNRQLETLVREMKNKRQFMNEETLKKLFKHYSLDG 558
           +++ +KN ++ L+TL+++ KN  Q   E   K + +   L G
Sbjct: 207 RKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERIRLAG 248


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +1

Query: 361 NHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVREMKNKRQFMNEE 519
           N  +E+ ++ +NP   +   +NL+ +L         +  + E++ K +  NEE
Sbjct: 44  NEKIEDINERSNPQWDNAGLENLLNQLQDSVEQSASDDFMGELEKKIEVENEE 96


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 501 TVHE*GNSKKVVQAL*FRWETRDDNNTPEVL 593
           TVH+    KK+   L + WE  + N+ P V+
Sbjct: 160 TVHDPDIQKKIKSILSYLWELSNTNDPPHVI 190


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
 Frame = +1

Query: 373  ENGSKSTNPPMTDEERDNLIKELMSK------NRNRQLETLVREMKNKRQFMNEET 522
            +NG+ + NP +++    N+ +E  S+      N N++ E    + KNKRQ ++ E+
Sbjct: 1475 QNGNVNRNPRVSNNNSTNVSRERSSEANHRTSNDNKRDEVTEGKDKNKRQDISGES 1530


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 397 PPMTDEERDNLIKELMSKNRNRQLETLVREMKNKRQFMNEE 519
           PP+  +ERD         NRN   +   + M + R+F  E+
Sbjct: 125 PPLERDERDAAAAHTSKANRNSARQMWAQLMASVRKFKRED 165


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/63 (20%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
 Frame = +1

Query: 349 VNIQNHMVENGSKSTNPPMTDEERDNLIKELMSKNR--NRQLETLVREMKNKRQFMNEET 522
           + ++NH++    +S N     ++  NL+   +S+ R  + ++ +LV++++N   F+ +E 
Sbjct: 80  IELRNHIITLSKRSVNMESRIDDMLNLLNYDLSEKRETSNEIPSLVQQIQN-CGFLIDEK 138

Query: 523 LKK 531
           +++
Sbjct: 139 MRR 141


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = -3

Query: 494 FFISLTRVSNCLFLFFDINSFIKLSRSSSVMGG 396
           FFI   ++ +C++LF+ I++ + +S S  ++GG
Sbjct: 121 FFIRFGKLGHCVYLFYCISTNVLVS-SLLLLGG 152


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 390 HQSSHDR*RTR*FNKRINVKKQKQTVGNS 476
           HQ+S    R++ F++ +NVKK+ + V +S
Sbjct: 90  HQTSKSVPRSQRFSRELNVKKENKKVFSS 118


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -3

Query: 533 NFFRVSSFMNC-LLFFISLTRVSNCLFL 453
           NFFR ++   C LLF++SL  ++N LFL
Sbjct: 15  NFFRNATLDQCLLLFYLSLFSLTN-LFL 41


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 331 TKEKNTVNIQNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETL 477
           T+   T N     +   S  T+P  TDE+R N        +RN QLET+
Sbjct: 633 TQTSITTNDNQSSILTSSDQTSPFATDEDRQN--------SRNVQLETV 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,182
Number of Sequences: 5004
Number of extensions: 45993
Number of successful extensions: 169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)