Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f17f
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0033 + 18500092-18501372,18502419-18502826,18502948-185029...    28   4.9  
07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478     28   6.5  
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226...    28   6.5  
07_03_0169 + 14670994-14673714,14673799-14673879,14675460-146756...    27   8.6  
04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501           27   8.6  

>11_05_0033 + 18500092-18501372,18502419-18502826,18502948-18502990,
            18503236-18503282,18504582-18505901
          Length = 1032

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -3

Query: 539  LNNFFRVSSFMNCLLFFISLTRVSNCLFLFFDINSFIKLSRSSSVMGGLVDLEPF 375
            + NF  V  F+ CL+  ++LT  SN   +FF     + L++ S ++ G  D + +
Sbjct: 857  IGNFSTVLCFIICLILNVTLTGGSN-RAIFFLAPILLLLNQDSDIIAGFGDRQRY 910


>07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478
          Length = 209

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 266 LYVSLPQVLMSLIHYLHKLCKEPKRKIR*TSKIIWLKMVLNPPIL 400
           LY  +P++ +  ++++ +LCK     +R   K +   ++  PP L
Sbjct: 38  LYEDVPEMPLMALNHISRLCKSIDASVRFYVKALGFVLIHRPPAL 82


>02_05_0902 +
           32620668-32621209,32621847-32622258,32622471-32622675,
           32622712-32622806,32622945-32623557,32623652-32623820,
           32624392-32624749,32625226-32625336,32626207-32626561,
           32627262-32627484,32627837-32628058,32628628-32628781
          Length = 1152

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +1

Query: 388 STNPPMTDEERDNLIKELMSKNRNRQLETL-VREMKNK---RQFMNEETLKKLFKHYSLD 555
           S +PP +DEER +  K+   + R R+ E     E   K   R +   ET  KL K Y  D
Sbjct: 109 SPSPPASDEERRDRRKDRKRRKRRREKERYNSAEASRKPGVRAWAGSET--KLAKDYYFD 166

Query: 556 GK 561
            K
Sbjct: 167 AK 168


>07_03_0169 +
           14670994-14673714,14673799-14673879,14675460-14675612,
           14675910-14676073,14676162-14676309,14676426-14676548,
           14676754-14676841,14677493-14677674
          Length = 1219

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 166 KRIKMNSMRIPLRKHPLNYLKAIHNV 243
           K  K  S+R+PL+K+ L+Y +++ N+
Sbjct: 443 KEEKQPSVRVPLQKNDLDYFQSLENM 468


>04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501
          Length = 506

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 536 NNFFRVSSFMNCLLFFISLTRVSNCLFLFFDINSFIKLSRSSS 408
           ++F    S +N L FF   TRV   + + FD  SF  +    S
Sbjct: 417 HDFHGTRSEVNFLKFFFETTRVLKIVVILFDTGSFSSMDEVRS 459


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,072,472
Number of Sequences: 37544
Number of extensions: 222374
Number of successful extensions: 571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)