Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f17f
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    26   0.32 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   4.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.3  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   6.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.2  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 196 PLRKHPLNYLKAIHNVLKIQ 255
           P +K+P    KA+HNV+ IQ
Sbjct: 443 PRKKYPFELEKALHNVMFIQ 462


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +1

Query: 340 KNTVNIQNHMVENGSKSTNPPMTDEERDNLIKELMSKNRNRQLETLVREMKNKR 501
           K   N QN   +NG++       D +++   +    +N NRQ +    +  N R
Sbjct: 479 KQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNR 532


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/42 (21%), Positives = 23/42 (54%)
 Frame = -3

Query: 533 NFFRVSSFMNCLLFFISLTRVSNCLFLFFDINSFIKLSRSSS 408
           +F+R  +  N L  ++    V++C+F+  +   F+  S++ +
Sbjct: 47  DFYRQDTKNNLLNAYVRFKLVTDCIFVTSEPGYFLYTSKNDN 88


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 151 NRNYNKRIKMNSMRIPLRKHPLNYLKAIHNVLKIQK 258
           N NYN     N+       +  NY K  +N++ I++
Sbjct: 326 NNNYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQ 361


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 145 IFNRNYNKRIKMNSMRI 195
           I N NYNK++  N + I
Sbjct: 323 IHNNNYNKKLYYNIINI 339


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 441 NVKKQKQTVGNSCKRNEK*KTVHE 512
           N+K QK+   +S   +E+  ++H+
Sbjct: 97  NIKSQKEFPNSSSSDDERPNSIHQ 120


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 107 TNRVHHIYNEIKHN 66
           TNR+  I+N  KH+
Sbjct: 743 TNRISRIFNASKHS 756


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,371
Number of Sequences: 438
Number of extensions: 3112
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)