Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f16f
         (626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.69 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.7  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   4.8  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   4.8  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   8.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 303 ISLCLHDFYLVVHHQSGCYEIQHRLHVLFFCLHQIFFQHHL 181
           I   +H  +L+  +   C  I   +H+LF C   IFF  HL
Sbjct: 154 IIFTVHLLFLLCIYHFFCAFIIFTMHLLFCCAF-IFFNMHL 193



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
 Frame = -3

Query: 303 ISLCLHDFY-----LVVHHQS-GCYEIQHRLHVLFFCLHQIFFQHHL 181
           I LC++ FY       VH     C    + +H+LF C   IF  H L
Sbjct: 234 ILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLL 280



 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 231 LHVLFFCLHQIFFQHHL 181
           +H+LF+C   IF  H L
Sbjct: 81  VHLLFYCPFIIFTVHFL 97


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 528  RSLGTADVVFERKADAVKAMKQYTGVPLDGRAM 626
            R +GT DV F+++   + A     G P+  R +
Sbjct: 1429 RQIGTLDVAFKKRFAKLNANGTNAGTPVLSRRL 1461


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 528  RSLGTADVVFERKADAVKAMKQYTGVPLDGRAM 626
            R +GT DV F+++   + A     G P+  R +
Sbjct: 1429 RQIGTLDVAFKKRFAKLNANGTNAGTPVLSRRL 1461


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 528  RSLGTADVVFERKADAVKAMKQYTGVPLDGRAM 626
            R +GT DV F+++   + A     G P+  R +
Sbjct: 1429 RQIGTLDVAFKKRFAKLNANGTNAGTPVLSRRL 1461


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 528  RSLGTADVVFERKADAVKAMKQYTGVPLDGRAM 626
            R +GT DV F+++   + A     G P+  R +
Sbjct: 1429 RQIGTLDVAFKKRFAKLNANGTNAGTPVLSRRL 1461


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 354 TYHVSKCCSHHPSNSW 307
           T+H+    S HP  SW
Sbjct: 150 THHLGSVYSRHPYESW 165


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -1

Query: 182 SNPCLFVGFYNIIQCHFNLINH 117
           ++ C++     II+  F+ +NH
Sbjct: 182 TSTCIYTNLLRIIEADFSKLNH 203


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 225 RGGGAGFRSNRSGGVQRGRNRGGITKS 305
           +GGGAG  ++ S   Q G+    I  S
Sbjct: 119 KGGGAGAAASGSAAAQAGQPDNAIEHS 145


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 484 NSENSSFISESDTPKSK 434
           +SENS   S S TPK K
Sbjct: 50  DSENSEVSSNSYTPKIK 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,648
Number of Sequences: 336
Number of extensions: 3439
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)