Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f16f
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 59 6e-10
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 48 1e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 46 3e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 46 4e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 45 8e-06
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 40 3e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.001
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 36 0.006
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 35 0.011
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 35 0.011
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 34 0.015
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 33 0.045
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 32 0.059
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.10
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 31 0.10
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 31 0.14
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 31 0.18
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.31
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.42
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 28 0.96
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 28 1.3
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.7
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.2
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.2
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 3.9
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 3.9
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 3.9
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 5.1
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 5.1
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 9.0
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 58.8 bits (136), Expect = 6e-10
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = +3
Query: 396 TITTGPTKLLVSNLDFGVSDSDIKELF-SEFGILKSASVHYDRSGRSLGTADVVFERKAD 572
++ + +K++VSNL V+++ +KELF G K S+ Y +GRS G A ++F R D
Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGD 108
Query: 573 AVKAMKQYTGVPLDG 617
A +A +QY G +DG
Sbjct: 109 ATRAYEQYEGRLVDG 123
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 47.6 bits (108), Expect = 1e-06
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Frame = +3
Query: 249 SNRSGGVQRGRNRGGITKSTNYSRGDVNST-----WKHDMFN--DFGERKLQRNSGTITT 407
S R G R + +T + + NS+ W+HD+ D R +
Sbjct: 23 SRRRGSQNRISKKSRLTYKFKRASKEHNSSPDDGPWQHDLDQEQDAHPRTTHLQKRQHSE 82
Query: 408 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAM 587
+ V NL + V + D+ LF F ++ ++YDR+GRS G+ DV FE DA A
Sbjct: 83 NRFGVRVENLHYQVLEKDVLSLFENFHPIR-VIMNYDRAGRSEGSCDVYFETSQDAEDAQ 141
Query: 588 KQYTGVPLDG 617
K L G
Sbjct: 142 KTLQSTNLKG 151
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 46.4 bits (105), Expect = 3e-06
Identities = 22/69 (31%), Positives = 39/69 (56%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYT 599
+ V NL + SD ++ +LF++ G + A + Y+ +GRS G V FE + DA ++++
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 600 GVPLDGRAM 626
G GR +
Sbjct: 342 GYRYGGRPL 350
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 435 LDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYTGVPLD 614
L + V D+K+LF + G + A + ++ GRS G VV +A+ A++
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 249
Query: 615 GRAM 626
GR +
Sbjct: 250 GRTL 253
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 46.0 bits (104), Expect = 4e-06
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +3
Query: 417 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQY 596
+L VSN+ F ++D D+K +F FG ++ + D RS G + + A A+++
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 597 TGVPLDGRAM 626
G L GR M
Sbjct: 401 NGFDLAGRNM 410
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 45.2 bits (102), Expect = 8e-06
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 596
+ +S L + +SDI+ F+ +G ++ V ++ +G+S+G A VVFER+ D A K
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 597 TGVPLDGR 620
G+ L+GR
Sbjct: 162 AGLMLNGR 169
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.9 bits (89), Expect = 3e-04
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +3
Query: 390 SGTITTGPTKLLVSNLDFGV--SDSDIKELFSEFGILKSASV-HYDRSGRSLGTADVVFE 560
+ T T P L V NLD + + ++ELFS+FG +KS ++ Y + S G V F
Sbjct: 411 TSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFS 470
Query: 561 RKADAVKAMKQYTGV 605
+AV+A+ GV
Sbjct: 471 HPFEAVQAINTLNGV 485
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Frame = +3
Query: 369 ERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGT-- 542
E+ ++N + + V NL SD+ ELF FG + + +S +
Sbjct: 5 EKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKS 64
Query: 543 ----ADVVFERKADAVKAMKQYTGVPLDGRAM 626
A + FE K A A+ G G +
Sbjct: 65 PTLFAFITFENKCSADNAIASLNGSSFQGNTL 96
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.9 bits (84), Expect = 0.001
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 596
+ + NLDF +++ DI +FSEFG ++ D+ +G+S G A + +E + V A+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 597 TGVPL 611
T V L
Sbjct: 93 TNVKL 97
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 35.5 bits (78), Expect = 0.006
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +3
Query: 408 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAM 587
GPT +++ NL G S D+ FG + + V+ D G+ A V F A A + +
Sbjct: 98 GPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVN-DSQGKV--RASVRFSTLASAQQVV 154
Query: 588 KQYTGVPLDG 617
++ GV DG
Sbjct: 155 QKLDGVTADG 164
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.7 bits (76), Expect = 0.011
Identities = 17/61 (27%), Positives = 35/61 (57%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYT 599
L + NL F ++ ++ +LF +G ++ + + ++ GTA VV+E DA +A ++ +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ--IRLGNTVQTRGTAFVVYENVQDARRACEKLS 71
Query: 600 G 602
G
Sbjct: 72 G 72
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 34.7 bits (76), Expect = 0.011
Identities = 19/85 (22%), Positives = 39/85 (45%)
Frame = +3
Query: 372 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADV 551
R+ Q + T + + NLD +++ + +LF +FG + S S+ D++ + G V
Sbjct: 247 RERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFV 306
Query: 552 VFERKADAVKAMKQYTGVPLDGRAM 626
+ A KA+ + G+ +
Sbjct: 307 NYANHECAQKAVDELNDKEYKGKKL 331
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 34.3 bits (75), Expect = 0.015
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFG-ILKSASVHYDRSGRSLGTADVVFERKADAVKAMK 590
L V NLDF +D+D+KE F + G I + + ++ +G+ G V F +KAM+
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.7 bits (71), Expect = 0.045
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 596
L V L+ D D++ +FS FG + S V D+ +G SL A + F+ K KA +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 597 TGVPLD 614
V +D
Sbjct: 306 QNVLID 311
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 32.3 bits (70), Expect = 0.059
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 462 IKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYTGVPLDGRAM 626
++ LF +G K V ++ R G A VVF+ +A +A+K G PL G+ M
Sbjct: 46 LEHLFGSYG--KVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPM 98
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 31.5 bits (68), Expect = 0.10
Identities = 22/52 (42%), Positives = 25/52 (48%)
Frame = +3
Query: 174 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDV 329
R GGG+ R G GG GF G RGR RGG +S N +RG V
Sbjct: 444 RTGGGS-----RGGRGGFGGRGGFGGRGGFGGGRGRGRGG-ARSGNPNRGSV 489
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.5 bits (68), Expect = 0.10
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEF-GILKS---ASVHYDRSGR--SLGTADVVFERKADAVK 581
+ V NL+F + +++F G L + A R G+ S+G V F+ KA AV
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 582 AMKQYTGVPLDGRAM 626
AM G LDG +
Sbjct: 681 AMHAMNGFVLDGHKL 695
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFGIL 494
LLV N +G S ++ LFS FG L
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGEL 532
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 31.1 bits (67), Expect = 0.14
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYT 599
L +SN+D VS++DIK LF + + SA V G S A + ++D A +
Sbjct: 75 LFISNIDPEVSENDIKYLFQRYNFI-SARVLRCVDGTSTSIAFIWLANESDIQNAQVEMQ 133
Query: 600 G 602
G
Sbjct: 134 G 134
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.7 bits (66), Expect = 0.18
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 596
L V+NL + ++++LF FG ++ + D+ +GR+ G A V + + A+KA +
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 597 TG 602
G
Sbjct: 264 DG 265
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.31
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 123 DQIEMALDDIIKANK---KTRIGGGAGRKFDANKRTGRGGGAGFRSNRSG--GVQRGRNR 287
D++ ++ D +I ++ K + G K N GRGG GFR R G G G +R
Sbjct: 100 DKVYLSGDKLIPLDRFLPKPKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSR 159
Query: 288 GG 293
GG
Sbjct: 160 GG 161
Score = 28.7 bits (61), Expect = 0.73
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +3
Query: 183 GGAGRKFDANKRTGRGGGA--GFRSNRSGGVQ---RGRNRGG 293
GG+ F N R G GGG+ GF GG + RG +RGG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 183 GGAGRKFDANKRTGRGGG-AGFRSNRSGGVQRGRNRGG 293
G AGR R GRGG GF N GG G +RGG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGF-GGGSRGG 169
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.42
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +3
Query: 186 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 293
G GR R GRGG G R SGG RG +GG
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGG--RGGAKGG 70
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 174 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQ 272
R G GR R GRGG +G R GG +
Sbjct: 40 RGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 0.96
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 162 NKKTRIGGGAGRK--FDANKRTGRGGGAGFRSNRSGGVQR 275
N+ GGG GR+ + + G G G+R+NR G R
Sbjct: 78 NRGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQWR 117
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 192 GRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 293
G + + N+ GGG G ++N GG + G + GG
Sbjct: 72 GGRREYNRGGHYGGGEGRQNNYRGGREGGYSNGG 105
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 432 NLDFGVSDSDIKELFSEFGILKSASVHY 515
+LD V D DI+ LFS F I KS +Y
Sbjct: 473 SLDETVCDKDIQALFSIFNINKSVDQYY 500
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFGILK 497
L VSNL G S S I LFS +G +K
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVK 27
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQ 593
++V+ + ++ +++LF++FG +K+ ++ D R+G G A + + A KA+ +
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDE 70
>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 218
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 70 KNKNNPFRTLPSQVDGDKM 14
KN N+ F+ LPS+ DGD M
Sbjct: 159 KNPNDVFQPLPSKRDGDNM 177
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 411 PTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKA 569
PT++ VSN+ V+ ++ F FG + + + +G SLG + F++++
Sbjct: 93 PTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRS 146
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 3.9
Identities = 21/89 (23%), Positives = 33/89 (37%)
Frame = +3
Query: 126 QIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKS 305
Q + L D +K +GG + + RG G R G + RNR G
Sbjct: 48 QSDFNLFDRQFTKRKFDVGGRRVKGTEGKPGVSRGVGEELRRRTIGAELKKRNRSGAIID 107
Query: 306 TNYSRGDVNSTWKHDMFNDFGERKLQRNS 392
+ + + + + M F R+ QR S
Sbjct: 108 RRFGENNPHLSVEEKMLERF-SREQQRRS 135
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 3.9
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 405 TGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKA 584
T T L +SNL ++SDI LF I+ S V D +S G + + A
Sbjct: 381 TESTNLYISNLPLHWNESDISTLFKPSKII-SNRVLRDSKEQSRGVGFARMQDRKTAEDI 439
Query: 585 MKQYTGVPLD 614
+ ++ LD
Sbjct: 440 INKFNNFVLD 449
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 5.1
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 186 GAGRKFDANKRTGRGGGAGFRSNR-SGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFND 362
G G F +N T G G+G +N SGG+ N T ST G + K F+
Sbjct: 282 GGGSAFGSNT-TNTGFGSG--TNNASGGLFGQNNNTTSTPSTGLFGGSTFNQQK-PAFSG 337
Query: 363 FGERKLQRNSGTIT 404
FG N+GT T
Sbjct: 338 FGSTTNTTNTGTGT 351
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 195 RKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVN 332
R+ N T G+G R R RGR RGG + Y+R N
Sbjct: 367 RERSLNMETFGVAGSGNRGRRG----RGRGRGGRGRGRGYARNQYN 408
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 123 DQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRS 260
D+ + A DD+ K N+ G + A TG + R+N S
Sbjct: 603 DETDAAKDDLFKVNESIETNGHENFQKQALTSTGEQSSSNSRANPS 648
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 246 RSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFN 359
+S++S G N + KSTN D + K +FN
Sbjct: 805 KSSKSEGKASVANMSALNKSTNNETSDSKPSLKSPLFN 842
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,114
Number of Sequences: 5004
Number of extensions: 55654
Number of successful extensions: 186
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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