Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f16f
(626 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 52 5e-07
SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10) 48 6e-06
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 45 4e-05
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 45 4e-05
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 42 4e-04
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 41 7e-04
SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0) 40 0.002
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 39 0.004
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 38 0.009
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.047
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 35 0.047
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.047
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 34 0.11
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) 33 0.14
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05) 33 0.25
SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 32 0.33
SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_56109| Best HMM Match : Collagen (HMM E-Value=0.79) 31 0.58
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41) 31 0.77
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 31 0.77
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26) 31 1.0
SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 30 1.3
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_4609| Best HMM Match : EGF (HMM E-Value=8.9e-07) 30 1.3
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 30 1.8
SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 30 1.8
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 30 1.8
SB_7544| Best HMM Match : TFIIB (HMM E-Value=4.2) 30 1.8
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 29 2.3
SB_19205| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28) 29 2.3
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 29 3.1
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 29 3.1
SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0) 29 3.1
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 29 4.1
SB_45304| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_43009| Best HMM Match : NHase_beta (HMM E-Value=0.46) 29 4.1
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 29 4.1
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_44117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_58757| Best HMM Match : GRP (HMM E-Value=0.0041) 28 5.4
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 28 5.4
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15) 28 7.1
SB_1089| Best HMM Match : AbfB (HMM E-Value=0.034) 28 7.1
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 28 7.1
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_48379| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_38268| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 79.0 bits (186), Expect = 3e-15
Identities = 56/120 (46%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Frame = +3
Query: 123 DQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITK 302
DQ++M+LDDIIK NKK+ GG GRGG G G V RGR RG +
Sbjct: 140 DQLDMSLDDIIKQNKKSSRGG-----------RGRGGSRGPGRRGGGPVGRGRTRG--NR 186
Query: 303 STNYSR-GDVNSTWKHDMFNDFGE--RKLQRNS---GTITTGPTKLLVSNLDFGVSDSDI 464
ST YSR ++ W+HD F+ G R S G I+TG +KL +SNLDFGVSDSDI
Sbjct: 187 STPYSRPRELPDRWQHDKFDGRGSGGRSFSGGSGGAGGISTG-SKLSISNLDFGVSDSDI 245
Score = 73.3 bits (172), Expect = 1e-13
Identities = 34/49 (69%), Positives = 40/49 (81%)
Frame = +3
Query: 468 ELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYTGVPLD 614
ELFSEFG +K + VHYD SGRS GTA+VVF R+ DA +A+KQY GVPLD
Sbjct: 1 ELFSEFGQVKRSCVHYDASGRSHGTAEVVFVRREDAQQALKQYNGVPLD 49
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +3
Query: 408 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKA 584
GPT+L V +L F ++++ +K +F FG + S + YD + RS G V F A +A
Sbjct: 240 GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRA 299
Query: 585 MKQYTGVPLDGRAM 626
M+Q G L GR +
Sbjct: 300 MEQMNGFELAGRPL 313
>SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10)
Length = 141
Score = 48.0 bits (109), Expect = 6e-06
Identities = 29/71 (40%), Positives = 39/71 (54%)
Frame = +3
Query: 414 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQ 593
T++ +SNL VS DI+ELF G+LKS + G A+VV+ K DAV A +
Sbjct: 16 TRVTISNLHPAVSRQDIEELFGAIGVLKSCKM------LRAGMAEVVYTTKEDAVTAYAR 69
Query: 594 YTGVPLDGRAM 626
Y LDG+ M
Sbjct: 70 YHNRNLDGQPM 80
>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 48.0 bits (109), Expect = 6e-06
Identities = 29/71 (40%), Positives = 39/71 (54%)
Frame = +3
Query: 414 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQ 593
T++ +SNL VS DI+ELF G+LKS + G A+VV+ K DAV A +
Sbjct: 221 TRVTISNLHPAVSRQDIEELFGAIGVLKSCKM------LRAGMAEVVYTTKEDAVTAYAR 274
Query: 594 YTGVPLDGRAM 626
Y LDG+ M
Sbjct: 275 YHNRNLDGQPM 285
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYT 599
L VSNL F +S+I+ELFS+ G++K + +R+G+ G V +E+++ A A+
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 600 GVPLDGRAM 626
+ GR +
Sbjct: 233 KTEVKGRTI 241
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +3
Query: 381 QRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVF 557
+++SG + V N+ + S+ +KE+FSE G + S + +DR +G+ G +
Sbjct: 14 KQSSGAADRSLRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEY 73
Query: 558 ERKADAVKAMKQYTGVPLDGRAM 626
+ + A+ AM+ G L+GRA+
Sbjct: 74 KDQETALSAMRNLNGYELNGRAL 96
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +3
Query: 372 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR-SLGTAD 548
R +R + T PTKL V++L V+ ++E+FS +G +K+ + DR+ S G A
Sbjct: 1143 RSPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAY 1202
Query: 549 VVFERKADAVKAMKQYTGVPLDGR 620
V + + KA+K G +DG+
Sbjct: 1203 VEYVDPEECEKALKHMDGGQIDGQ 1226
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 414 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMK 590
T L+++ + +S DIK++F G + S + DR +G+SLG A V ++ DA KA++
Sbjct: 27 TNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVR 86
Query: 591 QYTGVPLDGRAM 626
+ G L + +
Sbjct: 87 EMNGARLQNKTL 98
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +3
Query: 414 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSG---RSLGTADVVFERKADAVKA 584
++L++ NL F +++ +KE FS FG + ASV + G R +G V F DA KA
Sbjct: 247 SRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKA 306
Query: 585 MKQYTGVPLDGR 620
+++ + GR
Sbjct: 307 LEEMNAKKILGR 318
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 41.5 bits (93), Expect = 5e-04
Identities = 28/78 (35%), Positives = 40/78 (51%)
Frame = +3
Query: 360 DFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLG 539
D RK + T L V NLD V++ +++ FS+FG ++ A V D GRS G
Sbjct: 108 DMATRKGRTLRVRFATHAAALRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDVRGRSKG 167
Query: 540 TADVVFERKADAVKAMKQ 593
V F RK +A AM++
Sbjct: 168 HGIVEFSRKNNAHNAMQK 185
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Frame = +3
Query: 402 TTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSG----------------RS 533
++GP +L V+N+ F D+D++++F FG++ + Y+ G R
Sbjct: 64 SSGPKRLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRI 123
Query: 534 LGTADVVFERKADAVKAMKQYTGVPLDGR 620
G V F A+A KA ++ G +DGR
Sbjct: 124 EGFGFVTFNTAAEANKAREKLNGTIVDGR 152
>SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0)
Length = 304
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/38 (52%), Positives = 22/38 (57%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 293
GGG G + GRGGG GF+S R GG RG RGG
Sbjct: 45 GGGRGGPRGGGRGGGRGGGGGFKSPRGGG--RGGGRGG 80
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 417 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQY 596
KL + NL+F + +I++ F EFG+ K + SGRS G V+ + A+++
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFGVEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEKM 69
Query: 597 TGVPLDGR 620
+ GR
Sbjct: 70 NQSSVGGR 77
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +3
Query: 168 KTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 293
KT GG GR+ +R GRGGG G+ G GR+ GG
Sbjct: 87 KTENRGGGGRR----ERGGRGGGGGYGGGGGYG-GGGRSYGG 123
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +3
Query: 414 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQ 593
T + V N + D +KE+ +E G + S V D G+S G V FE +A +A+
Sbjct: 109 TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNV 168
Query: 594 YTGVPLDGRAM 626
G + GR +
Sbjct: 169 LNGKEIGGRRL 179
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQY 596
L V L+ +D D++ +FS FG + S V D ++G SL A + FE+ D +A +
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKM 181
Query: 597 TGVPLDGR 620
V +D R
Sbjct: 182 DNVLIDDR 189
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 36.7 bits (81), Expect = 0.015
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 408 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKA 584
G T L V NL + + D+K++F ++G L + DR + S G A V F K DA A
Sbjct: 14 GMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDA 73
Query: 585 M 587
M
Sbjct: 74 M 74
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 35.1 bits (77), Expect = 0.047
Identities = 18/38 (47%), Positives = 18/38 (47%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 293
GGG GR GRGG G R GG RGR GG
Sbjct: 150 GGGRGRGGGEGGWGGRGGNGGGRGGGEGGGGRGRGTGG 187
Score = 34.3 bits (75), Expect = 0.082
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKST 308
GG G + GRG G G S GG RGR RGG + T
Sbjct: 166 GGNGGGRGGGEGGGGRGRGTGGGSRGGGGDGRGRGRGGTEERT 208
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 293
G G G A GRGGG G G RG N GG
Sbjct: 134 GRGGGEGNGAGGGIGRGGGRGRGGGEGGWGGRGGNGGG 171
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKST-NYSRG 323
GGG GR + G GG G R GG G GG + T SRG
Sbjct: 144 GGGIGRGGGRGRGGGEGGWGG-RGGNGGGRGGGEGGGGRGRGTGGGSRG 191
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 35.1 bits (77), Expect = 0.047
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 426 VSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYTGV 605
+ NL + V + ++E F ++ + +GR G V F K + KA+ ++ G
Sbjct: 9 IGNLSYSVDEQALEEKFHGCDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQ 68
Query: 606 PLDGRAM 626
DGR M
Sbjct: 69 DFDGRPM 75
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG-RNRGGITKSTNYSR 320
GG G + GRGGG G+ R GG G R+ GG +K Y R
Sbjct: 109 GGYGGGRGGGGYGGGRGGG-GYGGGRGGGYGGGRRDYGGGSKGGGYDR 155
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 293
GGG G GRGGG G+ R GG G GG
Sbjct: 100 GGGYGGSSRGGYGGGRGGG-GYGGGRGGGGYGGGRGGG 136
>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 35.1 bits (77), Expect = 0.047
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 426 VSNLDFGVSDSDIKELFSEFGIL-KSASVHYDRSGRSLGTADVVFERKADAVKAMKQYTG 602
+ NL ++ I + F F +L ++ +HY GRS G A + F +DA A+ Q
Sbjct: 549 IRNLPSSITADQILDFFYGFNVLPETIKIHYLSPGRSSGDAMITFPTSSDAYAAIDQLNF 608
Query: 603 VPL 611
P+
Sbjct: 609 RPV 611
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 372 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTAD 548
++L+ + G+ + V+NL +SD++ELF G + + D+ + +S G A
Sbjct: 167 QQLKEDDGSGQHETATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAF 226
Query: 549 VVFERKADAVKAMKQYTGVPLD 614
+ F + DA +A++ +G D
Sbjct: 227 INFVHREDAARAIEVLSGFGYD 248
>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
Length = 221
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 222 GRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 323
GRGG AGFR GG+ RG RG + +RG
Sbjct: 129 GRGGAAGFRGRGRGGMTRGGPRGRASFGGRGARG 162
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +3
Query: 186 GAGRKF-DANKRTG-RGGGAGFRSNRSGGVQ--RGRNRGGITK 302
G GR A R G RG GF S GG RGR RGG+T+
Sbjct: 104 GPGRGMVGARGRAGFRGNRGGFTSPGRGGAAGFRGRGRGGMTR 146
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 33.5 bits (73), Expect = 0.14
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +3
Query: 405 TGPTKLLVSNLDFGVSDSDIKELFSEFG--ILKSASVHYDR-SGRSLGTADVVFERKADA 575
T K LV+++ +S+ LF G L S V DR +GR G V F + +
Sbjct: 4 TANVKCLVASIPLCFVESEADVLFLRNGSKFLLSVKVITDRETGRPRGFGFVTFGSEDEM 63
Query: 576 VKAMKQYTGVPLDGRAM 626
KA+ ++ G LDGR M
Sbjct: 64 DKAIDKFDGEDLDGRPM 80
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +3
Query: 156 KANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNS 335
+A + + GGG G + + GGG G+ R GG G RGG + +Y G +
Sbjct: 304 QARSREQRGGGRGGGYRS------GGGGGYGGGRGGGRGYGGGRGGGGR-RDYGGGSRSG 356
Query: 336 TWKHDMFN 359
D +N
Sbjct: 357 CDDQDSYN 364
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG---RNRGGITKST 308
GGG G GRGGG G+ R GG G R+ GG + ST
Sbjct: 105 GGGYGGSSRGGYGGGRGGG-GYGGGRGGGGSYGGGRRDYGGASIST 149
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 417 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 530
K+ + L FG ++ D+KE FS +G+++ Y G+
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYGMVEVKKAEYRERGQ 240
>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
Length = 267
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 165 KKTRIG-GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 293
KKTR GG G F G GGG GF GG G GG
Sbjct: 74 KKTRASVGGRGGGFGGGGGFGGGGGGGFGGGGGGGFGGGGGGGG 117
>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 294 CLHDFYLVVHHQSGCYEIQHR-LHVLFFCLHQIF 196
CLH + +H C + H LHVL+ CLH ++
Sbjct: 137 CLHVLHACLHVLYACLHVLHACLHVLYACLHVLY 170
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -3
Query: 348 HVSKCCSHHPSNSW*ISLCLHDFYLVVHHQSGCYEIQHR-LHVLFFCLHQIFFQHHL 181
H+S C + C+H Y +H C + + LHVL CLH ++ H+
Sbjct: 112 HISICTVFLKECLHMLYACVHVLYECLHVLHACLHVLYACLHVLHACLHVLYACLHV 168
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = +3
Query: 132 EMALDDIIKANKKTRIGGGAGRKFDANKRTG-------RGGGAGFRSNRSGGVQRGRNRG 290
EM D + + K RI G+ + A K G GGG G + GG G ++G
Sbjct: 171 EMENDGTVDVDLKIRINPGSAKALCAAKCEGSTDEKKKEGGGGGEEGAKEGGESEGGDKG 230
Query: 291 GITKSTNYSRGDVNSTWK 344
G + + NS+ K
Sbjct: 231 GAKEEAKTTPAPENSSTK 248
>SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 32.3 bits (70), Expect = 0.33
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 417 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQY 596
+L+V NL D+K+ + G + H DR G G D F ++D + A+K+
Sbjct: 344 RLIVENLSTRAGWQDLKDYMRQAGEVTFTQCHKDRVGE--GVCD--FSNESDMLYALKKL 399
Query: 597 TGVPLDGR 620
G L G+
Sbjct: 400 DGTELFGK 407
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 153 IKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSN---RSGGVQRGRNRG 290
+K + ++ GG GR+ GRGGG G+RS R GG RG G
Sbjct: 113 LKVAEASKDSGGGGRR-GGGYGGGRGGGGGYRSGGGYRGGGGYRGGGGG 160
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRG--GGAGFRSNRSGGVQRGRNRGG 293
G G GR R+G G GG G+R GG RGR RGG
Sbjct: 131 GYGGGRGGGGGYRSGGGYRGGGGYRG--GGGGYRGRGRGG 168
>SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 31.9 bits (69), Expect = 0.44
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +3
Query: 210 NKRTGRGGGAGFRSNRSGGVQRGRNRG--GITKSTNYSRGDVNSTWKHDMFNDFGERKLQ 383
++RTG G G+RS +RGR+RG G + YSR S K N G +
Sbjct: 18 SRRTGDRGYNGYRSPDDYYDRRGRDRGYDGRERDARYSREVTASAIK---VNPVGVAMEE 74
Query: 384 RN--SGTITTGPTKLLVSNLDFGVSDSD 461
N G I T T +++ L G+ SD
Sbjct: 75 VNLVGGAIATAVTAMMIMALTEGMHVSD 102
>SB_56109| Best HMM Match : Collagen (HMM E-Value=0.79)
Length = 327
Score = 31.5 bits (68), Expect = 0.58
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 177 IGGGAGRKFDANKRTG-RGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDM 353
+ GG G G GGGA F GG G + GG+T++T YS+ ++
Sbjct: 246 VNGGEGGLGTTGSEGGFGGGGAAFLYAGGGG---GYSGGGVTRATRYSKSGGGGSYNAGS 302
Query: 354 FNDFGERKLQRNSGTI 401
+ GE + Q+ G +
Sbjct: 303 GQE-GEVRGQKGEGRV 317
>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
Length = 487
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 171 TRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNST 338
T GG G+ F + G G G S ++GG N+GG + N + GD ST
Sbjct: 271 TAAGGQTGQDFSQDMS---GSGFGDSSFQAGGQMNQWNQGGASSGGNTAGGDQTST 323
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +3
Query: 183 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFND 362
GG G +FDA+ G GG G N GGV G GG T ++S+ D++ + D
Sbjct: 243 GGDGGRFDASNMGGATGGTG---NMFGGV-GGTAAGGQT-GQDFSQ-DMSGSGFGDSSFQ 296
Query: 363 FGERKLQRNSGTITTG 410
G + Q N G ++G
Sbjct: 297 AGGQMNQWNQGGASSG 312
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 213 KRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHD 350
+R G GGG G GG + GR RG T +T R T + D
Sbjct: 511 RRRGGGGGGGGGGGGGGGGRGGRGRGRPTTTTTTRRCVTQKTQRAD 556
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 186 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 293
G+ F + GRGG G R GG +RG+ RGG
Sbjct: 420 GSNDGFTQMRGGGRGGFRGNRGGFRGGNERGQRRGG 455
>SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)
Length = 765
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/82 (29%), Positives = 29/82 (35%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFN 359
GGG G G GGG G GG G GG GD + D N
Sbjct: 663 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAGAGAGDDDGDGDVDSNN 722
Query: 360 DFGERKLQRNSGTITTGPTKLL 425
+ + LQ + TGP + L
Sbjct: 723 NLSD--LQLTVRYLQTGPPRYL 742
>SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +3
Query: 132 EMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGG 266
+ LD+ + A ++R GGAGR F N+ GRG R NRS G
Sbjct: 197 QQELDNALLA--RSRQNGGAGRGF--NRTRGRGANHFNRGNRSSG 237
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQR-GRNRGGITKSTNYSRGDVNSTWKHDMF 356
G G N GG + N +GG G N GG N + G+ N +
Sbjct: 434 GNNGGNNNGGNTGGDNNGGNNYGGNNNGGNNNVGNNNGGNNNGGNNNGGNNNGGNNNGGN 493
Query: 357 NDFGERKLQRNSGTITTG 410
N+ G + N G G
Sbjct: 494 NNGGNNNGENNGGNNNGG 511
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/83 (24%), Positives = 26/83 (31%)
Frame = +3
Query: 162 NKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTW 341
N G N GG N +GG G N GG N + G+ N
Sbjct: 463 NNNVGNNNGGNNNGGNNNGGNNNGGNNNGGNNNGGNNNGENNGGNNNGGNNNGGNNNGGN 522
Query: 342 KHDMFNDFGERKLQRNSGTITTG 410
+ N+ G + N G G
Sbjct: 523 NNGGNNNGGNNNGENNGGNNNGG 545
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Frame = +3
Query: 162 NKKTRIGGGAGRKFDANKRTGRGGG---AGFRSNRSGGVQRGRNRGGITKSTNYSRGDV 329
N GG G N G GG G +GG G N GG + +N G+V
Sbjct: 595 NNGGNTGGNNGGNTGGNNNGGNTGGNNNGGNTGGNNGGNTGGNNNGGNSGGSNSHSGEV 653
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/86 (25%), Positives = 31/86 (36%)
Frame = +3
Query: 153 IKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVN 332
+ N GG + + N GG G N +GG G N GG N + G+ N
Sbjct: 408 VNNNNGNSNNGGNDKGGNTNGGNNNGGNNG--GNNNGGNTGGDNNGGNNYGGNNNGGNNN 465
Query: 333 STWKHDMFNDFGERKLQRNSGTITTG 410
+ N+ G N+G G
Sbjct: 466 VGNNNGGNNNGGNNNGGNNNGGNNNG 491
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/72 (27%), Positives = 25/72 (34%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFN 359
GG G + G GG N +GG G N GG T N N+ + N
Sbjct: 562 GGNTGGNNNGGNTGGNNGG-NTGGNNNGGNTGGNNNGGNTGGNNGGNTGGNNNGGNTGGN 620
Query: 360 DFGERKLQRNSG 395
+ G N G
Sbjct: 621 NNGGNTGGNNGG 632
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 417 KLLVSNLDFGVSDSDIKELFSEFGIL 494
++ + NL GV D+D+ E+FS++G +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI-TKSTNYSRGDVNSTWKHDMF 356
GG GR R GRGGG G+ GG + G RGG S N W D
Sbjct: 397 GGYRGRGGRGGYR-GRGGGRGYYRGGRGGGRGGGGRGGRGGLRGEASEASPNRDWV-DYP 454
Query: 357 NDFGERKLQRN 389
D KLQ+N
Sbjct: 455 LDNDTSKLQKN 465
>SB_4609| Best HMM Match : EGF (HMM E-Value=8.9e-07)
Length = 287
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 293
GG GR+F +N G GGG G GG G G
Sbjct: 246 GGVGGRQFSSNSYGGFGGGGGACGCNGGGAGGGGGYSG 283
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG---RNRGGITKSTNYSR 320
GGG G GRGGG G+ R GG G R+ GG +K Y R
Sbjct: 196 GGGYGGSSRGGYGGGRGGG-GYGGGRGGGGGYGGGRRDYGGGSKGGGYDR 244
>SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 290
GGG R G G G G R R GG RGR RG
Sbjct: 18 GGGGDRGRGRGHCLGHGSGRGGRGGR-GGSGRGRGRG 53
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +3
Query: 411 PTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMK 590
PT L + NL ++ ++ +FS++G + S + D+ S G E + +K
Sbjct: 178 PTNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIK 237
Query: 591 QYTGVPLDG 617
+ L G
Sbjct: 238 DFNKKMLPG 246
>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
Length = 475
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/72 (30%), Positives = 28/72 (38%)
Frame = +3
Query: 159 ANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNST 338
A +R G G GR GRG G G R G RGR R K+ YS D
Sbjct: 345 AKSPSRRGRGRGRG------RGRGRGRGSSRGRGRGRGRGRGRAKRRKTKEYSDDDSEEE 398
Query: 339 WKHDMFNDFGER 374
++ + + R
Sbjct: 399 FEDEEDESYSPR 410
>SB_7544| Best HMM Match : TFIIB (HMM E-Value=4.2)
Length = 273
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +3
Query: 342 KHDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR 521
+H+ FN ER ++R + + P +L V + + L EF + A Y+
Sbjct: 94 RHEQFNKMEERTVERTAEDRSPPPYNILGG----PVPEINAPTLMPEFALFDRALTEYET 149
Query: 522 SGRSLGTAD 548
S SLG D
Sbjct: 150 SRASLGDED 158
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +3
Query: 414 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQ 593
TKL V NL S+++ F +FG L V + G A V +E DA +A+++
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWV----ARNPPGFAFVEYEDYRDAEEAVRE 59
Query: 594 YTGVPLDGRAM 626
G + R +
Sbjct: 60 LDGANVCDRTI 70
>SB_19205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 183 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDM 353
G +G D R+G GG G N SG + G + + D NS+ HD+
Sbjct: 84 GESGGDGDDGNRSGESGGGGDDGNSSGETGGDSDDGNRSGESGGDGDDGNSSGVHDL 140
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 420 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKA 584
L V NL+ G+S D++ F +FG++ + G+ A V F A KA
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKA 293
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 417 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGT----ADVVFERKADAVKA 584
KL + NLD +S+ +I ++ +FG ++ + +G + G V F++K DA KA
Sbjct: 388 KLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKA 447
Query: 585 MK 590
++
Sbjct: 448 LR 449
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 216 RTGRGGG--AGFRSNRSGGVQRGRNRGG 293
R G GGG G+R GG + GR+RGG
Sbjct: 139 RDGGGGGYRGGYRGGYRGGYRGGRDRGG 166
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 228 GGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 323
GGG G+R GG RG RGG + Y G
Sbjct: 141 GGGGGYRGGYRGGY-RGGYRGGRDRGGGYGGG 171
>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
Length = 711
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +3
Query: 222 GRGGGAGFRSNRSGGVQRGRNRGGITKS 305
GRG G R R GG RGR RGG +S
Sbjct: 28 GRGSNRGGRGGRGGG--RGRGRGGRQRS 53
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI 296
GGG G D TG GGGA + G G GG+
Sbjct: 84 GGGGGATGDGGGATGGGGGATGGGGGATGGHGGATGGGV 122
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 495 KSASVHYDR-SGRSLGTADVVFERKADAVKAMKQYTGVPLDGRAM 626
++ ++ DR +GR G V F K + KA+ ++ G LDGR M
Sbjct: 123 EAVNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPM 167
>SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1184
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +3
Query: 222 GRGGGAGFRSNRSGGVQRGRNRGGITKS--TNYSRGDVNSTWKHDMFNDFGERKLQRNSG 395
G G G S G + GGIT S T + D N+ +D+ E L +G
Sbjct: 387 GAGAGTSDESRGGGESESAEEAGGITLSSVTCIAYEDNNNVLINDITVQLPEGSLTAVTG 446
Query: 396 TITTGPTKLLVS 431
+ +G T LL++
Sbjct: 447 PVGSGKTSLLLT 458
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGIT 299
GG +G F ++ G GG +G + G ++G RG T
Sbjct: 369 GGSSGGGFGSSMTNGFGGASGLTNGDDSGRRKGFGRGSRT 408
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 290
GGG G+ + GRG G G+ GG RG+ RG
Sbjct: 242 GGGMGQ---GPRGWGRGSGGGWGQGPGGGWGRGQGRG 275
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 290
GGG GR GRG G G+ + GG+ RG +G
Sbjct: 328 GGGMGR--GPGGGLGRGPGGGWGRMQGGGMGRGPGQG 362
>SB_45304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 168 KTRIGGGAGRKFDANK-RTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 323
K+ + GGAG + + N G GGG G GG G GG + S + S G
Sbjct: 450 KSFLAGGAGGRSNQNDVEGGFGGGGGPNGAGGGGGGGGGYSGGASGSRSNSCG 502
>SB_43009| Best HMM Match : NHase_beta (HMM E-Value=0.46)
Length = 543
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 510 HYDRSGRSLGTADVVFERKADAVKAMKQYTGVPLDG 617
H D G LG D VF +DA+ +++Y G P +G
Sbjct: 479 HIDMGGGYLGCEDRVFGGASDAIDVVRKY-GFPTNG 513
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 414 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR 521
TKL V + + D +++ F++FG ++ A V DR
Sbjct: 10 TKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDR 45
>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 183 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 293
GG G + R G G G G R GG G +RGG
Sbjct: 749 GGYGNRSGGGYRGGGGYGGGGGGYRGGGGYGGGHRGG 785
>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2631
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +3
Query: 180 GGGAGRKFDANKRTG--RGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNST 338
GG G A+ G GG +G + SGG G + G STN S S+
Sbjct: 803 GGAGGSSGGASGGAGGSSGGASGGAGSSSGGASGGADGGSNKSSTNQSGNSSESS 857
>SB_44117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 384 RNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 530
+N G I G + LV + F V+ +K+ +GI K S H R
Sbjct: 238 KNDGVIPVGTSFPLVKHTSFSVASMALKDNERNYGINKHPSSHEKEESR 286
>SB_58757| Best HMM Match : GRP (HMM E-Value=0.0041)
Length = 154
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = +3
Query: 99 EFQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG 278
+F II+++ ++ DD + GGG G G GGG G GG G
Sbjct: 35 DFLIISIMKDKDLKDDDDDDDDDDDDDGGGGGGGGGGGGGGGGGGGGGGDDGDGGGGDGG 94
Query: 279 RNRGG 293
GG
Sbjct: 95 GGGGG 99
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 387 NSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVF 557
N G + + L V+++ + ELF++FG +K + D SG+S + V F
Sbjct: 515 NEGFKMAASFPVWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHF 571
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 390 SGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTA 545
S + P K+ + L +++ +KEL S FG L++ ++ D +G S G A
Sbjct: 665 STVVPDSPHKIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYA 717
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 323
GGGA + R RG G G S G + R GG S + RG
Sbjct: 995 GGGASSAHIGHGRLTRGDGGGVSSVHIGHGRLTRGDGGGVSSVHIGRG 1042
>SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +3
Query: 171 TRIGGGAGRKFDANKRTGRGG---GAGFRSNRSGGVQRGRNRGG 293
+ IG G +N+ GRGG G +R G RGR RGG
Sbjct: 28 SNIGDGMEDDRQSNRGRGRGGYNNNQGSYRSRGRGRGRGRGRGG 71
>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 27.9 bits (59), Expect = 7.1
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Frame = +3
Query: 156 KANKKTRIGGGAGRKFDANKRTGRGGGA-----GFRSNRSGGVQRGRNRGGITKS---TN 311
K N + G G G + + TG GGGA GF + R GG RN G+T S
Sbjct: 367 KENGDSATGNGDGVTGNGDGVTGSGGGATRNGDGF-TGREGGAT--RNADGVTGSGGGAT 423
Query: 312 YSRGDVNST 338
RGDV +
Sbjct: 424 AMRGDVTGS 432
>SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15)
Length = 987
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 413 YQAACIQFGLWSIRFRY--KGTIFGIWHPQKCICT 511
+++ C QFG S RY KG++ IW P+K I +
Sbjct: 58 FESECYQFGEGSGLKRYLIKGSVPTIWKPRKTIAS 92
>SB_1089| Best HMM Match : AbfB (HMM E-Value=0.034)
Length = 472
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGR--GGGAGFRSNRSGGVQRGRNRGGITKSTN 311
GG AG A + G GGGA + GG Q G GG T ++
Sbjct: 118 GGQAGGGGQAGGQAGSQAGGGAAGGGGQEGGGQGGAQAGGSTSGSS 163
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 27.9 bits (59), Expect = 7.1
Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 7/146 (4%)
Frame = +3
Query: 171 TRIGG-GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYS-RGDVNSTWK 344
T++GG AG + G GG AG +GG G G T+ S G+ N
Sbjct: 289 TKVGGITAGGTAEGGNAGGNGGNAGGNGGMTGGGAGGEVELGFMLDTSTSLGGEANLKIT 348
Query: 345 HD----MFNDFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVH 512
D ++ F G + G + + + S ++I+ SE ++ A+
Sbjct: 349 LDFIKAVYGSFTISSSAYRVGVVIFGSSAKVAFDFSKFSSSAEIESGLSEIKLIGGATA- 407
Query: 513 YDRSGRSLGTAD-VVFERKADAVKAM 587
+G+ L T + +F + + K M
Sbjct: 408 ---AGQGLTTCNTALFSKARSSAKKM 430
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 180 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 290
GGG GR GRG G G+ + GG+ RG +G
Sbjct: 69 GGGMGR--GPGGGLGRGPGGGWGRMQEGGMGRGPGQG 103
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +3
Query: 165 KKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG 278
KK R G G G GR GG G S R+ G +RG
Sbjct: 1252 KKQRGGRGGGGDSRGGAMYGRQGGYGGGSRRTLGTRRG 1289
>SB_48379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 210 NKRTGRGGGAGFRSNRSGGVQRGRNR--GGITKSTNYSRGDV 329
+K GG ++NR GGV R +N GG+ +S N G V
Sbjct: 32 SKNNKLGGVWRSKNNRLGGVWRSKNNRLGGVWRSKNNRLGGV 73
>SB_38268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 372 SHQNH*TYHVSKCCSHHPSNSW*ISLCLHDFYLVVHHQSGCYEIQHR 232
+HQ ++ K C H+ W ++ L +L H+ Y+IQ++
Sbjct: 420 AHQCWTRWNGQKMCKHYYKQKWTYAIPLEIIFLTPLHRWNPYDIQYK 466
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,184,261
Number of Sequences: 59808
Number of extensions: 409432
Number of successful extensions: 1720
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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