Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f16f
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.8  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   4.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 315 SRGDVNSTWKHDMFNDFGERKLQRNSG 395
           S  D++S W  D  +   E+K+ ++SG
Sbjct: 192 SGDDLSSEWDSDYTDKSNEKKIPKSSG 218


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 203 KFSSSTTSNPCL 168
           KF  S TSNPCL
Sbjct: 97  KFECSKTSNPCL 108


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/48 (20%), Positives = 22/48 (45%)
 Frame = +1

Query: 136 WHWMIL*KPTKRQGLEVVLEENLMQTKEQDVEAVLDFVATALVVYNEV 279
           W+W  L +P    G    L+ ++ + +EQ    +       +V +N++
Sbjct: 26  WNWNTLLRPNFLDGWYQTLQTHMKKVREQMAGILSRIPEQGVVNWNKI 73


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 623 CPSIKWHSGILFHSLHSIC 567
           C  I  H G++ ++  SIC
Sbjct: 165 CAVISMHDGLVLYTTPSIC 183


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 623 CPSIKWHSGILFHSLHSIC 567
           C  I  H G++ ++  SIC
Sbjct: 160 CAVISMHDGLVLYTTPSIC 178


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 206  IKFSSSTTSNPCLFVGFYNII 144
            IKF   TTS P +FV    I+
Sbjct: 1517 IKFVPGTTSQPEVFVNGEKIV 1537


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,998
Number of Sequences: 438
Number of extensions: 4275
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)